ctdnep1 CTD nuclear envelope phosphatase 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: ctdnep1provided by Xenbase
Official Full Name: CTD nuclear envelope phosphatase 1provided by Xenbase
Primary source: Xenbase:XB-GENE-5939296
See related: Ensembl:ENSXETG00000043462
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: net56; dullard; ctdnep1-a; ctdnep1-b; hsa011916
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	3	NC_030679.2 (153346378..153365703, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	Unplaced Scaffold	NW_016688040.1 (931..3202)

Chromosome 3 - NC_030679.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables myosin phosphatase activity	IEA Inferred from Electronic Annotation more info
enables phosphatase activity	IEA Inferred from Electronic Annotation more info
enables phosphoprotein phosphatase activity	IEA Inferred from Electronic Annotation more info
enables protein serine/threonine phosphatase activity	IBA Inferred from Biological aspect of Ancestor more info
enables protein serine/threonine phosphatase activity	IEA Inferred from Electronic Annotation more info
enables protein serine/threonine phosphatase activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within nervous system development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within nuclear envelope organization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within positive regulation of triglyceride biosynthetic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein dephosphorylation	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
part_of Nem1-Spo7 phosphatase complex	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in endoplasmic reticulum membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in nuclear envelope	ISS Inferred from Sequence or Structural Similarity more info
located_in nuclear membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in perinuclear region of cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: CTD nuclear envelope phosphatase 1

Names: dullard homolog; serine/threonine-protein phosphatase dullard

NP_001017177.1

EC 3.1.3.16

XP_031753818.1

EC 3.1.3.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017177.2 → NP_001017177.1 CTD nuclear envelope phosphatase 1

See identical proteins and their annotated locations for NP_001017177.1

Status: PROVISIONAL

Source sequence(s)

CR760700

UniProtKB/Swiss-Prot

Q28HW9

UniProtKB/TrEMBL

A0A803KFY9

Related

ENSXETP00000119171.1, ENSXETT00000112448.1

Conserved Domains (1) summary

TIGR02251
Location:61 → 229

HIF-SF_euk; Dullard-like phosphatase domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

153346378..153365703 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031897958.1 → XP_031753818.1 CTD nuclear envelope phosphatase 1 isoform X1

UniProtKB/TrEMBL

A0A803KFY9, A0A8J1J7H2

Related

ENSXETP00000102354.1, ENSXETT00000110506.1

Conserved Domains (1) summary

TIGR02251
Location:58 → 226

HIF-SF_euk; Dullard-like phosphatase domain