RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001039690.3 → NP_001034779.1 chromosome transmission fidelity protein 8 homolog
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the functional protein. Both variants 1 and 4 encode the same protein.
- Source sequence(s)
-
BC018700, BP222147, BU739855
- Consensus CDS
-
CCDS42185.1
- UniProtKB/Swiss-Prot
-
P0CG13
- Related
- ENSP00000408367, OTTHUMP00000225367, ENST00000448552, OTTHUMT00000376352
- Conserved Domains (1) summary
-
- pfam09696
Location:15 – 113
Blast Score: 254
- Ctf8; Ctf8
-
NM_001040146.3 → NP_001035236.1 chromosome transmission fidelity protein 8 homolog
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Both variants 1 and 4 encode the same protein.
- Source sequence(s)
-
AC009027, BC069059, BU739855, CN388626
- Consensus CDS
-
CCDS42185.1
- UniProtKB/Swiss-Prot
-
P0CG13
- Related
- ENSP00000381290, OTTHUMP00000225506, ENST00000398235, OTTHUMT00000376642
- Conserved Domains (1) summary
-
- pfam09696
Location:15 – 113
Blast Score: 254
- Ctf8; Ctf8
RNA
-
NR_033227.1 RNA Sequence
- Description
- Transcript Variant: This variant (2) lacks the translational start codon found in variant 1. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL833902, BP195395, BP222147, BU739855
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000016.9 Reference GRCh37.p5 Primary Assembly
- Range
- 69151912..69166493, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000148.1 Alternate HuRef
- Range
- 55024647..55039230, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Suppressed Reference Sequence(s)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_001002847.1: Suppressed sequence
- Description
- NM_001002847.1: This RefSeq was permanently suppressed because the protein coding region was erroneously annotated in the 3' UTR and represented an invalid protein (NP_001002847.1).
-
NM_001040144.1: Suppressed sequence
- Description
- NM_001040144.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
-
NM_001040145.1: Suppressed sequence
- Description
- NM_001040145.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
-
NM_017804.3: Suppressed sequence
- Description
- NM_017804.3: This RefSeq was permanently suppressed because the protein coding region was erroneously annotated in the 3' UTR and represented an invalid protein (NP_060274.3).