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LOC548617 phosphofructokinase [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 548617, updated on 14-Dec-2023

Summary

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Gene symbol
LOC548617
Gene description
phosphofructokinase
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145613.1 (9503700..9527482, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577197.1 (57542..88324)

NW_022145613.1Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex component 3 associated protein Neighboring gene U6atac minor spliceosomal RNA Neighboring gene splicing factor 3b subunit 6 Neighboring gene tRNA methyltransferase 11 homolog Neighboring gene diacylglycerol kinase theta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Estimating metazoan divergence times with a molecular clock. Peterson KJ, et al. Proc Natl Acad Sci U S A, 2004 Apr 27. PMID 15084738, Free PMC Article
  2. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphofructokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables AMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fructose-6-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical glycolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fructose 1,6-bisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fructose 6-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 6-phosphofructokinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent 6-phosphofructokinase, muscle type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145613.1 Reference Spur_5.0 Primary Assembly

    Range
    9503700..9527482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030974361.1 → XP_030830221.1  ATP-dependent 6-phosphofructokinase, muscle type

    UniProtKB/TrEMBL
    A0A7M7N470
    Conserved Domains (1) summary
    TIGR02478
    Location:77 → 823
    6PF1K_euk; 6-phosphofructokinase, eukaryotic type
Nucleotide Protein
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