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    AHI1 Abelson helper integration site 1 [ Homo sapiens (human) ]

    Gene ID: 54806, updated on 22-May-2013
    Official Symbol
    AHI1provided by HGNC
    Official Full Name
    Abelson helper integration site 1provided by HGNC
    Primary source
    HGNC:21575
    Locus tag
    RP1-32B1.2
    See related
    Ensembl:ENSG00000135541; HPRD:10597; MIM:608894; Vega:OTTHUMG00000015631
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ORF1; AHI-1; JBTS3; dJ71N10.1
    Summary
    This gene is apparently required for both cerebellar and cortical development in humans. This gene mutations cause specific forms of Joubert syndrome-related disorders. Joubert syndrome (JS) is a recessively inherited developmental brain disorder with several identified causative chromosomal loci. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Oct 2008]
    Location :
    6q23.3
    Sequence :
    Chromosome: 6; NC_000006.11 (135605110..135818903, complement)
    See AHI1 in Epigenomics, MapViewer

    Chromosome 6 - NC_000006.11Genomic Context describing neighboring genes Neighboring gene v-myb myeloblastosis viral oncogene homolog (avian) Neighboring gene microRNA 548a-2 Neighboring gene beta-transducin repeat containing pseudogene Neighboring gene long intergenic non-protein coding RNA 271 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 73 Neighboring gene high mobility group box 1 pseudogene 17

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Joubert syndrome 3

    Summary from GeneReviews: Joubert Syndrome and Related Disorders Go to GeneReviews

    Disease Characteristics
    Classic Joubert syndrome is characterized by three primary findings: A distinctive cerebellar and brain stem malformation called the molar tooth sign (MTS) . Hypotonia. Developmental delays . Often these findings are accompanied by episodic tachypnea or apnea and/or atypical eye movements. In general, the breathing abnormalities improve with age, truncal ataxia develops over time, and acquisition of gross motor milestones is delayed. Cognitive abilities are variable, ranging from severe intellectual disability to normal. The designation Joubert syndrome and related disorders (JSRD) is used to describe individuals with JS who have additional findings including retinal dystrophy, renal disease, ocular colobomas, occipital encephalocele, hepatic fibrosis, polydactyly, oral hamartomas, and endocrine abnormalities. Both intra- and interfamilial variation are seen.
    Diagnosis Testing
    The diagnosis of JSRD is based on the presence of characteristic clinical features and magnetic resonance images (MRI) through the junction of the midbrain and pons (isthmus region) that resemble a molar tooth. To date mutations in one of the following 18 genes are identified in about 50% of individuals with a JSRD: NPHP1, CEP290, AHI1, TMEM67 (MKS3), RPGRIP1L, CC2D2A, ARL13B, INPP5E, OFD1, TMEM216, KIF7, TCTN1, TCTN2, TMEM237, CEP41, TMEM138, C5orf42, and TTC21B; the other genes in which mutations are causative are unknown. Molecular genetic testing is clinically available for most of the known genes.
    Genetic Counseling
    JSRDs are predominantly inherited in an autosomal recessive manner. JSRD caused by mutation of OFD1 is inherited in an X-linked manner. Digenic inheritance has been reported. For autosomal recessive inheritance: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations have been identified in the family. For pregnancies at known increased risk for Joubert syndrome prenatal diagnosis by ultrasound examination with or without fetal MRI has been successful.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:120163 BioGRID:108309 ELAVL1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:120163 BioGRID:115900 KHDRBS1    BioGRID  PubMed Protein-peptide 

    Markers

    Homology

    Clone Names

    • FLJ14023, FLJ20069, DKFZp686J1653

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    Kupffer's vesicle development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular protein localization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    central nervous system development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cilium assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cilium morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cloaca development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    heart looping ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    hindbrain development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    left/right axis specification ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    morphogenesis of a polarized epithelium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    otic vesicle development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    photoreceptor cell outer segment organization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of polarized epithelial cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of receptor internalization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of transcription from RNA polymerase II promoter ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    pronephric duct morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    pronephric nephron tubule morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein localization to organelle IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of behavior ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    retina layer formation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    specification of axis polarity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transmembrane receptor protein tyrosine kinase signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    TCTN-B9D complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    adherens junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell-cell junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centriole ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    microtubule basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nonmotile primary cilium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    primary cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    jouberin
    Names
    jouberin
    contatins SH3 and WD40 domains
    abelson helper integration site 1 protein homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008643.1 RefSeqGene

      Range
      5001..218794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001134830.1NP_001128302.1  jouberin isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5', compared to variant 1. Variants 1, 2 and 3 encode the same isoform (a).
      Source sequence(s)
      AI300295, AJ459824, BX643029
      Consensus CDS
      CCDS47483.1
      UniProtKB/Swiss-Prot
      Q8N157
      Related
      ENSP00000356774, OTTHUMP00000234456, ENST00000367800, OTTHUMT00000391948
      Conserved Domains (3) summary
      cd00200
      Location:580871
      Blast Score: 308
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      COG2319
      Location:553905
      Blast Score: 202
      COG2319; FOG: WD40 repeat [General function prediction only]
      cd11812
      Location:10551106
      Blast Score: 292
      SH3_AHI-1; Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)
    2. NM_001134831.1NP_001128303.1  jouberin isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same isoform (a).
      Source sequence(s)
      AI300295, AJ459824, AY133243, BX643029
      Consensus CDS
      CCDS47483.1
      UniProtKB/Swiss-Prot
      Q8N157
      UniProtKB/TrEMBL
      Q8NER0
      Conserved Domains (3) summary
      cd00200
      Location:580871
      Blast Score: 308
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      COG2319
      Location:553905
      Blast Score: 202
      COG2319; FOG: WD40 repeat [General function prediction only]
      cd11812
      Location:10551106
      Blast Score: 292
      SH3_AHI-1; Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)
    3. NM_001134832.1NP_001128304.1  jouberin isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and the 3' coding region, compared to variant 1. The resulting isoform (b) contains a distinct C-terminus, compared to isoform a.
      Source sequence(s)
      AJ459824, AJ459825, BX643029
      Consensus CDS
      CCDS47484.1
      UniProtKB/Swiss-Prot
      Q8N157
      Related
      ENSP00000322478, OTTHUMP00000017265, ENST00000327035, OTTHUMT00000042355
      Conserved Domains (2) summary
      cd00200
      Location:580871
      Blast Score: 303
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      COG2319
      Location:553905
      Blast Score: 199
      COG2319; FOG: WD40 repeat [General function prediction only]
    4. NM_017651.4NP_060121.3  jouberin isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5', compared to variant 1. Variants 1, 2 and 3 encode the same isoform (a).
      Source sequence(s)
      AI300295, AJ459824, BX643029
      Consensus CDS
      CCDS47483.1
      UniProtKB/Swiss-Prot
      Q8N157
      Related
      ENSP00000388650, OTTHUMP00000234654, ENST00000457866, OTTHUMT00000392253
      Conserved Domains (3) summary
      cd00200
      Location:580871
      Blast Score: 308
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      COG2319
      Location:553905
      Blast Score: 202
      COG2319; FOG: WD40 repeat [General function prediction only]
      cd11812
      Location:10551106
      Blast Score: 292
      SH3_AHI-1; Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000006.11 Reference GRCh37.p10 Primary Assembly

      Range
      135605110..135818903, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000138.1 Alternate HuRef

      Range
      133169009..133382975, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018917.1 Alternate CHM1_1.0

      Range
      135605488..135819296, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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