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    HYDIN HYDIN, axonemal central pair apparatus protein [ Homo sapiens (human) ]

    Gene ID: 54768, updated on 5-May-2013
    Official Symbol
    HYDINprovided by HGNC
    Official Full Name
    HYDIN, axonemal central pair apparatus proteinprovided by HGNC
    Primary source
    HGNC:19368
    See related
    Ensembl:ENSG00000157423; HPRD:11042; MIM:610812; Vega:OTTHUMG00000137584
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CILD5; HYDIN1; HYDIN2; PPP1R31
    Summary
    This gene encodes a protein that may be involved in cilia motility. Mutations in this gene cause of autosomal recessive primary ciliary dyskinesia-5, a disorder characterized by the accumulation of cerebrospinal fluid within the ventricles of the brain. A duplicate copy of this gene has been found in humans on chromosome 1. [provided by RefSeq, Jan 2013]
    Location :
    16q22.2
    Sequence :
    Chromosome: 16; NC_000016.9 (70841287..71264625, complement)
    See HYDIN in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene Vac14 homolog (S. cerevisiae) Neighboring gene transfer RNA glycine 20 (anticodon GCC) Neighboring gene transfer RNA glycine 16 (anticodon GCC) Neighboring gene FtsJ methyltransferase domain containing 1 Neighboring gene calbindin 2

    Related articles in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Ciliary dyskinesia, primary, 5

    Summary from GeneReviews: Primary Ciliary Dyskinesia Go to GeneReviews

    Disease Characteristics
    Primary ciliary dyskinesia (PCD) is associated with situs abnormalities, abnormal sperm motility, and abnormal ciliary structure and function that result in retention of mucus and bacteria in the respiratory tract leading to chronic oto-sino-pulmonary disease. More than 75% of full-term neonates with PCD have 'neonatal respiratory distress' requiring supplemental oxygen for days to weeks. Chronic airway infection, apparent in early childhood, results in bronchiectasis that is almost uniformly present in adulthood. Nasal congestion and sinus infections, apparent in early childhood, persist through adulthood. Chronic/recurrent ear infection, apparent in most young children, can be associated with transient or later irreversible hearing loss. Situs inversus totalis (mirror-image reversal of all visceral organs with no apparent physiologic consequences) is present in 50% of individuals with PCD; heterotaxy (discordance of right and left patterns of ordinarily asymmetric structures that can be associated with significant malformations) is present in approximately 6%. Approximately 50% of males with PCD are infertile as a result of abnormal sperm motility.
    Diagnosis Testing
    The diagnosis of PCD requires the presence of the characteristic clinical phenotype and either (1) specific ciliary ultrastructural defects identified by transmission electron microscopy in biopsy samples of the respiratory epithelium or (2) mutation in one of seventeen genes known to be associated with PCD: DNAI1, DNAAF3, DNAH5, HYDIN, NME8, DNAH11, DNAI2, DNAAF2 (C14orf104), RSPH4A, RSPH9, DNAAF1 (LRRC50), CCDC39, CCDC40, DNAL1, CCDC103, HEATR2, and LRRC6. Biallelic mutations in: DNAI1 account for approximately 2%-9% of all PCD; DNAH5 account for approximately 15%-21% of all PCD. Molecular genetic testing of fifteen of the known genes is available on a clinical basis.
    Genetic Counseling
    PCD is inherited in an autosomal recessive manner. The parents of an affected individual are obligate heterozygotes and therefore carry one mutant allele. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:120142 BioGRID:1172319 PPP1CA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120142 BioGRID:113164 UBC    BioGRID  PubMed Reconstituted Complex 

    Markers

    Clone Names

    • FLJ12871, FLJ14665, KIAA1864, DKFZp434D0513, DKFZp434L0850
    Preferred Names
    hydrocephalus-inducing protein homolog
    Names
    hydrocephalus-inducing protein homolog
    protein phosphatase 1, regulatory subunit 31

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_033116.1 RefSeqGene

      Range
      5001..428339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198542.1NP_001185471.1  hydrocephalus-inducing protein homolog isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and initiates translation at an alternate upstream start codon, compared to variant 1. This variant also differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (c) has distinct N- and C-termini and is shorter than isoform a.
      Source sequence(s)
      AK057467, AK299016, AK299348, BP228881, DB339472
      Consensus CDS
      CCDS56004.1
      UniProtKB/TrEMBL
      B4DQY4
      UniProtKB/Swiss-Prot
      Q4G0P3
      Related
      ENSP00000444970, OTTHUMP00000258465, ENST00000538248, OTTHUMT00000398679
      Conserved Domains (1) summary
      pfam00635
      Location:230296
      Blast Score: 87
      Motile_Sperm; MSP (Major sperm protein) domain
    2. NM_001198543.1NP_001185472.1  hydrocephalus-inducing protein homolog isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and initiates translation at an alternate upstream start codon, compared to variant 1. This variant also differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (d) has distinct N- and C-termini and is shorter than isoform a.
      Source sequence(s)
      AK057467, AK299016, AK299348, DB339472
      Consensus CDS
      CCDS56005.1
      UniProtKB/TrEMBL
      B4DQY4
      UniProtKB/TrEMBL
      F5H6V3
      UniProtKB/Swiss-Prot
      Q4G0P3
      Related
      ENSP00000437341, OTTHUMP00000258466, ENST00000541601, OTTHUMT00000398681
      Conserved Domains (1) summary
      pfam00635
      Location:220286
      Blast Score: 87
      Motile_Sperm; MSP (Major sperm protein) domain
    3. NM_001270974.1NP_001257903.1  hydrocephalus-inducing protein homolog isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
      Source sequence(s)
      AC027281, AC099495, AC138625
      Consensus CDS
      CCDS59269.1
      UniProtKB/Swiss-Prot
      Q4G0P3
      Related
      ENSP00000377197, OTTHUMP00000238203, ENST00000393567, OTTHUMT00000398624
    4. NM_017558.4NP_060028.2  hydrocephalus-inducing protein homolog isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (b) has a distinct C-terminus and is shorter than isoform a.
      Source sequence(s)
      AK022933, AK299016, AK299348, AL122038, DA758908
      Consensus CDS
      CCDS10897.1
      UniProtKB/TrEMBL
      B4DQY4
      UniProtKB/Swiss-Prot
      Q4G0P3
      Related
      ENSP00000314736, OTTHUMP00000174909, ENST00000321489, OTTHUMT00000268974
      Conserved Domains (1) summary
      pfam00635
      Location:203269
      Blast Score: 87
      Motile_Sperm; MSP (Major sperm protein) domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p10 Primary Assembly

      Range
      70841287..71264625, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      56672780..56695211, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018927.1 Alternate CHM1_1.0

      Range
      71847083..72270411, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_032821.2: Suppressed sequence

      Description
      NM_032821.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein. Splice sites in exons 25 and 26 were based on predictions and are not supported by orthologous transcript data.

      Supplemental Content

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