These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001256826.1 → NP_001243755.1 RNA polymerase II-associated factor 1 homolog isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region and uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK098423, BC000017, BC013402, DA821359
- UniProtKB/Swiss-Prot
-
Q8N7H5
- Conserved Domains (1) summary
-
- pfam03985
Location:17 – 361
Blast Score: 1066
- Paf1; Paf1
-
NM_019088.3 → NP_061961.2 RNA polymerase II-associated factor 1 homolog isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
- Source sequence(s)
-
BC000017, DA821359
- Consensus CDS
-
CCDS12533.1
- UniProtKB/Swiss-Prot
-
Q8N7H5
- Related
- ENSP00000221265, ENST00000221265
- Conserved Domains (1) summary
-
- pfam03985
Location:27 – 371
Blast Score: 1031
- Paf1; Paf1
RNA
-
NR_046384.1 RNA Sequence
- Description
- Transcript Variant: This variant (3) lacks an internal exon and includes an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK294625, BC000017, DA821359
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000019.9 Reference GRCh37.p5 Primary Assembly
- Range
- 39876269..39881679, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000151.1 Alternate HuRef
- Range
- 36322971..36328381, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)