These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001173531.1 → NP_001167002.1 POU domain, class 5, transcription factor 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream non-AUG (CUG) start codon, compared to variant 1. The resulting isoform (2, also known as OCT4B-190) is shorter at the N-terminus, compared to isoform 1. Both variants 2 and 3 encode the same isoform. The predominant use of the non-AUG (CUG) start codon is described in PMID:19489092. This variant may also encode an additional shorter isoform through the use of an alternative downstream AUG start codon.
- Source sequence(s)
-
AI811039, DQ486515, DQ486516
- Consensus CDS
-
CCDS47398.1
- Related
- ENSP00000425479, OTTHUMP00000221150, ENST00000512818, OTTHUMT00000367030
- Conserved Domains (2) summary
-
- cd00086
Location:61 – 119
Blast Score: 153
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
- cl02582
Location:1 – 42
Blast Score: 224
- Pou; Pou domain - N-terminal to homeobox domain
-
NM_002701.4 → NP_002692.2 POU domain, class 5, transcription factor 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1, also known as OCT4A).
- Source sequence(s)
-
AI811039, BC117435, DQ486517
- Consensus CDS
-
CCDS34391.1
- UniProtKB/TrEMBL
-
D2IYK3
- UniProtKB/Swiss-Prot
-
Q01860
- Conserved Domains (2) summary
-
- cd00086
Location:231 – 289
Blast Score: 159
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
- smart00352
Location:138 – 212
Blast Score: 361
- POU; Found in Pit-Oct-Unc transcription factors
-
NM_203289.4 → NP_976034.4 POU domain, class 5, transcription factor 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream non-AUG (CUG) start codon, compared to variant 1. The resulting isoform (2, also known as OCT4B-190) is shorter at the N-terminus, compared to isoform 1. Both variants 2 and 3 encode the same isoform. The predominant use of the non-AUG (CUG) start codon is described in PMID:19489092. This variant may also encode additional isoforms through the use of an alternative downstream AUG start codon, as well as an alternative upstream AUG start codon, which is polymorphic (AGG in this RefSeq and in the GRCh37 primary assembly, and AUG in all other assemblies, see dbSNP:3130932), as described in PMID:1408763.
- Source sequence(s)
-
AI811039, DQ486515
- Consensus CDS
-
CCDS47398.1
- Related
- ENSP00000425083, OTTHUMP00000221151, ENST00000471529, OTTHUMT00000076414
- Conserved Domains (2) summary
-
- cd00086
Location:61 – 119
Blast Score: 153
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
- cl02582
Location:1 – 42
Blast Score: 224
- Pou; Pou domain - N-terminal to homeobox domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p10 ALT_REF_LOCI_2
Genomic
-
NT_113891.2 Reference GRCh37.p10 ALT_REF_LOCI_2
- Range
- 2646867..2653222, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p10 ALT_REF_LOCI_3
Genomic
-
NT_167245.1 Reference GRCh37.p10 ALT_REF_LOCI_3
- Range
- 2429238..2435593, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p10 ALT_REF_LOCI_4
Genomic
-
NT_167246.1 Reference GRCh37.p10 ALT_REF_LOCI_4
- Range
- 2480458..2486814, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p10 ALT_REF_LOCI_5
Genomic
-
NT_167247.1 Reference GRCh37.p10 ALT_REF_LOCI_5
- Range
- 2514037..2520393, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p10 ALT_REF_LOCI_6
Genomic
-
NT_167248.1 Reference GRCh37.p10 ALT_REF_LOCI_6
- Range
- 2427966..2434320, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p10 ALT_REF_LOCI_7
Genomic
-
NT_167249.1 Reference GRCh37.p10 ALT_REF_LOCI_7
- Range
- 2467051..2473404, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p10 Primary Assembly
Genomic
-
NC_000006.11 Reference GRCh37.p10 Primary Assembly
- Range
- 31132114..31138451, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000138.1 Alternate HuRef
- Range
- 30934532..30940887, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CHM1_1.0
Genomic
-
NC_018917.1 Alternate CHM1_1.0
- Range
- 31049039..31055376, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)