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    Plav_1101 RND family efflux transporter MFP subunit [ Parvibaculum lavamentivorans DS-1 ]

    Gene ID: 5456536, updated on 18-May-2013
    Gene symbol
    Plav_1101
    Gene description
    RND family efflux transporter MFP subunit
    Locus tag
    Plav_1101
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Parvibaculum lavamentivorans DS-1 (strain: DS-1)
    Lineage
    Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Parvibaculum
    Sequence :
    NC_009719.1 (1208697..1209941, complement)

    NC_009719.1Genomic Context describing neighboring genes Neighboring gene RND efflux system outer membrane lipoprotein Neighboring gene ABC transporter-like protein Neighboring gene alcohol dehydrogenase Neighboring gene NAD+ synthetase Neighboring gene glutamyl-tRNA synthetase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Parvibaculum lavamentivorans DS-1T degrades centrally substituted congeners of commercial linear alkylbenzenesulfonate to sulfophenyl carboxylates and sulfophenyl dicarboxylates. Schleheck D, et al. Appl Environ Microbiol, 2007 Aug. PMID 17557839.
    2. Omega-oxygenation of the alkyl sidechain of linear alkylbenzenesulfonate (LAS) surfactant in Parvibaculum lavamentivorans(T). Schleheck D, et al. Arch Microbiol, 2005 Sep. PMID 16075201.
    3. Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph that initiates catabolism of linear alkylbenzenesulfonate. Schleheck D, et al. Int J Syst Evol Microbiol, 2004 Sep. PMID 15388700.
    4. Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria. Schleheck D, et al. Appl Environ Microbiol, 2004 Jul. PMID 15240283.
    5. Parvibaculum lavamentivorans converts linear alkylbenzenesulphonate surfactant to sulphophenylcarboxylates, alpha,beta-unsaturated sulphophenylcarboxylates and sulphophenyldicarboxylates, which are degraded in communities. Dong W, et al. J Appl Microbiol, 2004. PMID 14962144.

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    RND family efflux transporter MFP subunit
    YP_001412379.1
    • TIGRFAM: efflux transporter, RND family, MFP subunit~PFAM: secretion protein HlyD family protein~KEGG: maq:Maqu_1339 efflux transporter, RND family, MFP subunit

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009719.1

      Range
      1208697..1209941, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_001412379.1 RND family efflux transporter MFP subunit [Parvibaculum lavamentivorans DS-1]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A7HS39
      Conserved Domains (3) summary
      PRK11578
      Location:40 – 388
      Blast Score: 758
      PRK11578; macrolide transporter subunit MacA; Provisional
      pfam13533
      Location:93 – 139
      Blast Score: 119
      Biotin_lipoyl_2; Biotin-lipoyl like
      pfam13437
      Location:216 – 320
      Blast Score: 148
      HlyD_3; HlyD family secretion protein
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000774.1 ABS62722.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    ZP_01659846.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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