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Smarcal1 SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [ Mus musculus (house mouse) ]

Gene ID: 54380, updated on 8-May-2016
Official Symbol
Smarcal1provided by MGI
Official Full Name
SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1provided by MGI
Primary source
MGI:MGI:1859183
See related
Ensembl:ENSMUSG00000039354 Vega:OTTMUSG00000021499
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mharp; AI851716; 6030401P21Rik
Orthologs
Location:
1 C3; 1 36.72 cM
Exon count:
23
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 1 NC_000067.6 (72536687..72636790)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (72629825..72683364)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 39661 Neighboring gene membrane-associated ring finger (C3HC4) 4 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene predicted gene, 39662 Neighboring gene ankyrin and armadillo repeat containing Neighboring gene ribosomal protein L19 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
DNA-dependent ATPase activity IDA
Inferred from Direct Assay
more info
PubMed 
DNA-dependent ATPase activity ISO
Inferred from Sequence Orthology
more info
 
annealing helicase activity ISO
Inferred from Sequence Orthology
more info
 
helicase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA metabolic process ISO
Inferred from Sequence Orthology
more info
 
DNA strand renaturation ISO
Inferred from Sequence Orthology
more info
 
cellular response to DNA damage stimulus ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
replication fork processing ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
colocalizes_with DNA replication factor A complex ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
site of double-strand break ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Names
hepA-related protein
sucrose nonfermenting protein 2-like 1
NP_061287.2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018817.2NP_061287.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    See identical proteins and their annotated locations for NP_061287.2

    Status: VALIDATED

    Source sequence(s)
    AC163484, AK083488, AK146767, BY739344
    Consensus CDS
    CCDS35609.1
    UniProtKB/Swiss-Prot
    Q8BJL0
    Related
    ENSMUSP00000047589, OTTMUSP00000023911, ENSMUST00000047615, OTTMUST00000050950
    Conserved Domains (4) summary
    pfam07443
    Location:214268
    HARP; HepA-related protein (HARP)
    COG0553
    Location:316820
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:413541
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:659787
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p3 C57BL/6J

    Range
    72536687..72636790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496141.2XP_006496204.1  

    See identical proteins and their annotated locations for XP_006496204.1

    UniProtKB/Swiss-Prot
    Q8BJL0
    Conserved Domains (4) summary
    pfam07443
    Location:214268
    HARP; HepA-related protein (HARP)
    COG0553
    Location:316820
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:413541
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:659787
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
  2. XM_006496143.2XP_006496206.1  

    See identical proteins and their annotated locations for XP_006496206.1

    UniProtKB/Swiss-Prot
    Q8BJL0
    Conserved Domains (4) summary
    pfam07443
    Location:214268
    HARP; HepA-related protein (HARP)
    COG0553
    Location:316820
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:413541
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:659787
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
  3. XM_011238557.1XP_011236859.1  

    Conserved Domains (4) summary
    pfam07443
    Location:214268
    HARP; HepA-related protein (HARP)
    COG0553
    Location:316797
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:413541
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:659787
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
  4. XM_006496142.2XP_006496205.1  

    See identical proteins and their annotated locations for XP_006496205.1

    UniProtKB/Swiss-Prot
    Q8BJL0
    Related
    ENSMUSP00000137833, OTTMUSP00000062986, ENSMUST00000152225, OTTMUST00000050955
    Conserved Domains (4) summary
    pfam07443
    Location:214268
    HARP; HepA-related protein (HARP)
    COG0553
    Location:316820
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:413541
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:659787
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
  5. XM_006496144.1XP_006496207.1  

    See identical proteins and their annotated locations for XP_006496207.1

    UniProtKB/Swiss-Prot
    Q8BJL0
    Conserved Domains (4) summary
    pfam07443
    Location:214268
    HARP; HepA-related protein (HARP)
    COG0553
    Location:316820
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:413541
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:659787
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
  6. XM_006496145.2XP_006496208.1  

    Conserved Domains (4) summary
    pfam07443
    Location:862
    HARP; HepA-related protein (HARP)
    COG0553
    Location:22517
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:119247
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:365493
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...

Alternate Mm_Celera

Genomic

  1. AC_000023.1 Alternate Mm_Celera

    Range
    73151284..73205338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)