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    CYCS cytochrome c, somatic [ Homo sapiens (human) ]

    Gene ID: 54205, updated on 15-Jun-2013
    Official Symbol
    CYCSprovided by HGNC
    Official Full Name
    cytochrome c, somaticprovided by HGNC
    Primary source
    HGNC:19986
    See related
    HPRD:00479; MIM:123970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CYC; HCS; THC4
    Summary
    This gene encodes a small heme protein that functions as a central component of the electron transport chain in mitochondria. The encoded protein associates with the inner membrane of the mitochondrion where it accepts electrons from cytochrome b and transfers them to the cytochrome oxidase complex. This protein is also involved in initiation of apoptosis. Mutations in this gene are associated with autosomal dominant nonsyndromic thrombocytopenia. Numerous processed pseudogenes of this gene are found throughout the human genome.[provided by RefSeq, Jul 2010]
    Location :
    7p15.3
    Sequence :
    Chromosome: 7; NC_000007.13 (25158270..25164980, complement)
    See CYCS in Epigenomics, MapViewer

    Chromosome 7 - NC_000007.13Genomic Context describing neighboring genes Neighboring gene deafness, autosomal dominant 5 Neighboring gene oxysterol binding protein-like 3 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene Neighboring gene chromosome 7 open reading frame 31 Neighboring gene ribosomal protein L7a pseudogene 41

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Protein Gene Interaction Pubs
    Env, gp160, envelope glycoprotein env Treatment of CD4+ cells with HIV-1 gp160 causes intracellular calcium increase followed by the release of cytochrome c from mitochondria; association of BAD with Bcl-xL is observed, and a portion of BAD is dephosphorylated after gp160 induction PubMed
    Envelope surface glycoprotein gp120 env PDGF protects neurons from gp120-induced cytotoxicity through an increased phosphorylation of both GSK-3beta and Bad, the downregulation of the proapoptotic protein Bax, and inhibition of gp120-induced release of mitochondrial cytochrome C PubMed
    env Apoptosis induced by HIV-1 gp120/gp41 is involved in the translocation of cytochrome c and apoptosis-inducing factor (AIF) from mitochondria to an extra-mitochondrial localization and in the dissipation of the mitochondrial transmembrane potential PubMed
    env Treatment of cerebrocortical cultures with HIV-1 gp120 results in increased caspase-3 proteolytic activity, mitochondrial release of cytochrome c, and neuronal apoptosis PubMed
    Tat, p14 tat Both HIV-1 Tat 47-59 and FITC-labeled Tat 47-59 peptides upregulate gene expression of cytochrome c, somatic (CYCS) in U-937 macrophages PubMed
    tat HIV-1 Tat (specifically, amino acids 38-72), enhances tubulin polymerization and triggers the mitochondrial pathway to induce T cell apoptosis as shown in vitro by the release of cytochrome c from isolated mitochondria PubMed
    Vpr, p15 vpr HIV-1 Vpr induces downregulation of the Bcl-xl protein, upregulation of the Bax expression, and the cytochrome c release from the mitochondria in multidrug-resistant human colorectal cancer cells PubMed
    vpr Overproduction of EEF2 blocks HIV-1 Vpr-induced cell death both in fission yeast and human cells, suppresses caspase 9 and caspase 3-mediated apoptosis induced by Vpr, and reduces cytochrome c release induced by Vpr PubMed
    pol gag-pol HIV-1 protease directly cleaves and activates procaspase 8 in T cells, which is associated with cleavage of BID, mitochondrial release of cytochrome c, activation of the downstream caspases 9 and 3, and cleavage of DFF and PARP PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    P99999 ATP/GTP binding protein 1 AGTPBP1    HPRD  PubMed  
    P99999 O14727 APAF1    HPRD  PubMed  
    P99999 P10415 BCL2    HPRD  PubMed  
    P99999 Q07817 BCL2L1    HPRD  PubMed  
    P99999 P55211 CASP9    HPRD  PubMed  
    P99999 Q96KJ9 COX4I2    HPRD  PubMed  
    P99999 P00167 CYB5A    HPRD  PubMed  
    P99999 Cytochrome b5 reductase 1 CYB5R1    HPRD  PubMed  
    P99999 P00387 CYB5R3    HPRD  PubMed  
    P99999 P08574 CYC1    HPRD  PubMed  
    P99999 P10109 FDX1    HPRD  PubMed  
    P99999 P11142 HSPA8    HPRD  PubMed  
    P99999 P04792 HSPB1    HPRD  PubMed  
    P99999 NADPH dependent diflavin oxidoreductase 1 NDOR1    HPRD  PubMed  
    P99999 Q9UBF6 RNF7    HPRD  PubMed  
    P99999 Q15424 SAFB    HPRD  PubMed  
    P99999 P37840 SNCA    HPRD  PubMed  
    P99999 P31930 UQCRC1    HPRD  PubMed  
    P99999 P45880 VDAC2    HPRD  PubMed  
    BioGRID:119922 BioGRID:116885 AGTPBP1    BioGRID  PubMed Two-hybrid 
    BioGRID:119922 BioGRID:106814 APAF1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:119922 BioGRID:106895 ARL2    BioGRID  PubMed Co-fractionation 
    BioGRID:119922 BioGRID:107057 BAX    BioGRID  PubMed Co-localization 
    BioGRID:119922 BioGRID:107070 BCL2L1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:119922 BioGRID:107452 CDK2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119922 BioGRID:124215 COX4I2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:119922 BioGRID:107908 CYB5A    BioGRID  PubMed Reconstituted Complex 
    BioGRID:119922 BioGRID:107917 CYC1    BioGRID  PubMed Biochemical Activity 
    BioGRID:119922 BioGRID:131875 GSTK1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119922 BioGRID:109544 HSPA8    BioGRID  PubMed Reconstituted Complex 
    BioGRID:119922 BioGRID:109547 HSPB1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:119922 BioGRID:109883 ITGA4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119922 BioGRID:118038 NDOR1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:119922 BioGRID:112860 PRDX2    BioGRID  PubMed Co-fractionation 
    BioGRID:119922 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119922 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119922 BioGRID:113230 UQCRC1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:119922 BioGRID:113259 VDAC1    BioGRID  PubMed Co-purification 
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      Caspase cascade in apoptosis, organism-specific biosystem
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      Formation of apoptosome, organism-specific biosystemCytoplasmic cytochrome c binds to apoptotic protease activating factor-1 (Apaf-1) promoting the formation of an Apaf-1 oligomer (the apoptosome) which in turn binds and activates caspase-9.
    • HIV-1 Nef: Negative effector of Fas and TNF-alpha, organism-specific biosystem (from Pathway Interaction Database)
      HIV-1 Nef: Negative effector of Fas and TNF-alpha, organism-specific biosystem
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    Markers

    Homology

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    cytosol IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cytosol TAS
    Traceable Author Statement
    more info
     
    mitochondrial inner membrane TAS
    Traceable Author Statement
    more info
     
    mitochondrial intermembrane space TAS
    Traceable Author Statement
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
     
    protein phosphatase type 2A complex TAS
    Traceable Author Statement
    more info
    PubMed 
    respiratory chain IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    cytochrome c
    Names
    cytochrome c

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_023438.1 RefSeqGene

      Range
      5001..11711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_018947.5NP_061820.1  cytochrome c

      Status: REVIEWED

      Source sequence(s)
      AC004129, AC007487, AI365318, BC024216, DB447825
      Consensus CDS
      CCDS5393.1
      UniProtKB/TrEMBL
      G4XXL9
      UniProtKB/Swiss-Prot
      P99999
      Conserved Domains (2) summary
      COG2010
      Location:2100
      Blast Score: 85
      CccA; Cytochrome c, mono- and diheme variants [Energy production and conversion]
      cl11414
      Location:2105
      Blast Score: 382
      Cytochrom_C; Cytochrome c

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000007.13 Reference GRCh37.p10 Primary Assembly

      Range
      25158270..25164980, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000139.1 Alternate HuRef

      Range
      25044828..25051539, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CRA_TCAGchr7v2

    Genomic

    1. AC_000068.1 Alternate CRA_TCAGchr7v2

      Range
      25209510..25216457, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018918.1 Alternate CHM1_1.0

      Range
      25132244..25138957, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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