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FAM193B family with sequence similarity 193 member B [ Bos taurus (cattle) ]

Gene ID: 538655, updated on 5-Mar-2024

Summary

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Official Symbol
FAM193Bprovided by VGNC
Official Full Name
family with sequence similarity 193 member Bprovided by VGNC
Primary source
VGNC:VGNC:28774
See related
Ensembl:ENSBTAG00000015192
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See FAM193B in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (39020440..39051228, complement)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene docking protein 3 Neighboring gene DEAD-box helicase 41 Neighboring gene transmembrane emp24 domain-containing protein 9 Neighboring gene ubiquitin-conjugating enzyme E2 G1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC138012

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAM193B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046433.2 → NP_001039898.2  protein FAM193B

    See identical proteins and their annotated locations for NP_001039898.2

    Status: VALIDATED

    Source sequence(s)
    BC151322, EH157173
    UniProtKB/Swiss-Prot
    A7MB40, Q2HJB4
    Related
    ENSBTAP00000049740.1, ENSBTAT00000054949.3
    Conserved Domains (1) summary
    pfam15914
    Location:768 → 818
    FAM193_C; FAM193 family C-terminal

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    39020440..39051228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005209221.5 → XP_005209278.1  protein FAM193B isoform X5

    Conserved Domains (1) summary
    pfam15914
    Location:767 → 817
    FAM193_C; FAM193 family C-terminal

  2. XM_005209217.3 → XP_005209274.1  protein FAM193B isoform X2

    Conserved Domains (1) summary
    pfam15914
    Location:847 → 897
    FAM193_C; FAM193 family C-terminal

  3. XM_005209216.5 → XP_005209273.1  protein FAM193B isoform X1

    UniProtKB/TrEMBL
    A0A452DIL0
    Related
    ENSBTAP00000020211.6, ENSBTAT00000020211.7
    Conserved Domains (1) summary
    pfam15914
    Location:848 → 898
    FAM193_C; FAM193 family C-terminal

  4. XM_005209218.5 → XP_005209275.1  protein FAM193B isoform X3

    Conserved Domains (3) summary
    pfam05518
    Location:158 → 253
    Totivirus_coat; Totivirus coat protein
    pfam15914
    Location:798 → 848
    FAM193_C; FAM193 family C-terminal
    cl26464
    Location:540 → 772
    Atrophin-1; Atrophin-1 family

  5. XM_010807165.4 → XP_010805467.1  protein FAM193B isoform X6

    See identical proteins and their annotated locations for XP_010805467.1

    Conserved Domains (3) summary
    pfam05518
    Location:95 → 190
    Totivirus_coat; Totivirus coat protein
    pfam15914
    Location:735 → 785
    FAM193_C; FAM193 family C-terminal
    cl26464
    Location:477 → 709
    Atrophin-1; Atrophin-1 family

  6. XM_059888320.1 → XP_059744303.1  protein FAM193B isoform X7

  7. XM_005209220.5 → XP_005209277.1  protein FAM193B isoform X4

    Related
    ENSBTAP00000095446.1, ENSBTAT00000117883.1
    Conserved Domains (3) summary
    pfam05518
    Location:130 → 225
    Totivirus_coat; Totivirus coat protein
    pfam15914
    Location:770 → 820
    FAM193_C; FAM193 family C-terminal
    cl26464
    Location:512 → 744
    Atrophin-1; Atrophin-1 family

  8. XM_059888319.1 → XP_059744302.1  protein FAM193B isoform X6

  9. XM_059888318.1 → XP_059744301.1  protein FAM193B isoform X6

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A7MB40.1 GenPept UniProtKB/Swiss-Prot:A7MB40

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