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    PMM2 phosphomannomutase 2 [ Homo sapiens (human) ]

    Gene ID: 5373, updated on 22-May-2013
    Official Symbol
    PMM2provided by HGNC
    Official Full Name
    phosphomannomutase 2provided by HGNC
    Primary source
    HGNC:9115
    See related
    Ensembl:ENSG00000140650; HPRD:03472; MIM:601785; Vega:OTTHUMG00000129697
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PMI; CDG1; CDGS; PMI1; CDG1a; PMM 2
    Summary
    The protein encoded by this gene catalyzes the isomerization of mannose 6-phosphate to mannose 1-phosphate, which is a precursor to GDP-mannose necessary for the synthesis of dolichol-P-oligosaccharides. Mutations in this gene have been shown to cause defects in glycoprotein biosynthesis, which manifests as carbohydrate-deficient glycoprotein syndrome type I. [provided by RefSeq, Jul 2008]
    Location :
    16p13
    Sequence :
    Chromosome: 16; NC_000016.9 (8891670..8943194)
    See PMM2 in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene 4-aminobutyrate aminotransferase Neighboring gene RNA, U7 small nuclear 63 pseudogene Neighboring gene transmembrane protein 186 Neighboring gene calcium regulated heat stable protein 1, 24kDa Neighboring gene ubiquitin specific peptidase 7 (herpes virus-associated)

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Carbohydrate-deficient glycoprotein syndrome type I

    Summary from GeneReviews: PMM2-CDG (CDG-Ia) Go to GeneReviews

    Disease Characteristics
    PMM2-CDG (CDG-1a) (previously known as congenital disorder of glycosylation type 1a), the most common of a group of disorders of abnormal glycosylation of N-linked oligosaccharides, is divided into three stages: infantile multisystem, late-infantile and childhood ataxia-intellectual disability, and adult stable disability. The three stages notwithstanding, clinical presentation and course are highly variable, ranging from infants who die in the first year of life to mildly involved adults. Clinical presentations tend to be similar in siblings. In the infantile multisystem stage, infants show axial hypotonia, hyporeflexia, esotropia, and developmental delay; feeding problems, vomiting, and diarrhea with failure to thrive; and impaired growth. Subcutaneous fat may be excessive over the buttocks and suprapubic region. Two distinct clinical presentations are observed: (1) a non-fatal neurologic form with strabismus, psychomotor retardation, and cerebellar hypoplasia in infancy followed by neuropathy and retinitis pigmentosa in the first or second decade and (2) a neurologic-multivisceral form with approximately 20% mortality in the first year of life. The late-infantile and childhood ataxia-intellectual disability stage, with onset between age three and ten years, is characterized by hypotonia, ataxia, severely delayed language and motor development, inability to walk, and IQ of 40 to 70; other findings include stroke-like episodes or transient unilateral loss of function, retinitis pigmentosa, joint contractures, and skeletal deformities. In the adult stable disability stage, intellectual ability is stable; peripheral neuropathy is variable, thoracic and spinal deformities progress, and premature aging is observed; females lack secondary sexual development and males may exhibit decreased testicular volume. Hyperglycemia-induced growth hormone release, hyperprolactinemia, insulin resistance, and coagulopathy may occur. An increased risk of deep venous thrombosis is present.
    Diagnosis Testing
    PMM2-CDG (CDG-Ia) is diagnosed by clinical features, neuroimaging, and transferrin isoform analysis to determine the number of sialylated N-linked oligosaccharide residues linked to serum transferrin. Characteristic findings are decreased tetrasialotransferrin and increased asialotransferrin and disialotransferrin. PMM2 is the only gene associated with PMM2-CDG (CDG-Ia). Sequence analysis of PMM2 detects mutations in up to 100% of individuals in whom PMM2-CDG (CDG-Ia) has been enzymatically confirmed in research studies.
    Genetic Counseling
    PMM2-CDG (CDG-Ia) is inherited in an autosomal recessive manner. At conception, the theoretic risks to sibs of an affected individual are a 25% risk of being affected, a 50% risk of being an asymptomatic carrier, and a 25% risk of being unaffected and not a carrier; however, based on outcomes of at-risk pregnancies, the risk of having an affected child is closer to 1/3 than to the expected 1/4. Carrier testing for at-risk family members and prenatal diagnosis for pregnancies at increased risk for PMM2-CDG (CDG-Ia) is possible when both disease-causing mutations in the family have been identified.
    References

    Summary from GeneReviews: Congenital Disorders of Glycosylation Overview Go to GeneReviews

    Disease Characteristics
    Congenital disorders of glycosylation (CDG) are a group of disorders of abnormal glycosylation of N-linked oligosaccharides caused by deficiency in 34 different enzymes in the N-linked oligosaccharide synthetic pathway. Most commonly, the disorders begin in infancy; manifestations range from severe developmental delay and hypotonia with multiple organ system involvement to hypoglycemia and protein-losing enteropathy with normal development. However, most types have been described in only a few individuals, and thus understanding of the phenotypes is limited. In PMM2-CDG (CDG-Ia), the most common type reported, the clinical presentation and course are highly variable, ranging from death in infancy to mild involvement in adults.
    Diagnosis Testing
    The diagnostic test for all types of CDG is transferrin isoform analysis to determine the number of sialylated N-linked oligosaccharide residues linked to serum transferrin. Such testing is clinically available. While the enzyme is known in most CDG types, the enzymatic assay has not been developed. Thus, clarification of type requires molecular genetic testing, which is available clinically for many of the types.
    Genetic Counseling
    The CDGs are inherited in an autosomal recessive manner with two exceptions, MAGT1-CDG and ALG13-CDG, which are inherited in an X-linked manner. In the autosomal recessive disorders, the theoretic risks to each sib of an affected individual are, at conception: a 25% risk of being affected, a 50% risk of being an asymptomatic carrier, and a 25% risk of being unaffected and not a carrier. However, based on outcomes of at-risk pregnancies in families with a child with PMM2-CDG (CDG-Ia), the risk of having an affected child is closer to 1/3 than to the expected 1/4. Carrier testing for at-risk family members and prenatal diagnosis for pregnancies at increased risk are possible if both disease-causing mutations in a family are known. If no laboratories offering prenatal testing are listed in the GeneTests Laboratory Directory, such testing may be available through laboratories offering custom prenatal testing.
    References
    Protein Gene Interaction Pubs
    pol gag-pol Positional proteomics analysis identifies the cleavage of human phosphomannomutase 2 (PMM2) at amino acid residues 10-11 by the HIV-1 protease PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:111386 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111386 BioGRID:118880 TAGLN3    BioGRID  PubMed Co-fractionation 
    BioGRID:111386 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    phosphomannomutase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    GDP-mannose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    GDP-mannose biosynthetic process TAS
    Traceable Author Statement
    more info
     
    cellular protein metabolic process TAS
    Traceable Author Statement
    more info
     
    dolichol-linked oligosaccharide biosynthetic process TAS
    Traceable Author Statement
    more info
     
    mannose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    post-translational protein modification TAS
    Traceable Author Statement
    more info
     
    protein N-linked glycosylation via asparagine TAS
    Traceable Author Statement
    more info
     
    protein glycosylation TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol TAS
    Traceable Author Statement
    more info
     
    neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    phosphomannomutase 2
    Names
    phosphomannomutase 2
    phosphomannose isomerase 1
    NP_000294.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009209.1 RefSeqGene

      Range
      5001..56525
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000303.2NP_000294.1  phosphomannomutase 2

      Status: REVIEWED

      Source sequence(s)
      AB209659, AK291537, BC008310, BF811414, BM973590, DC366756
      Consensus CDS
      CCDS10536.1
      UniProtKB/Swiss-Prot
      O15305
      UniProtKB/TrEMBL
      Q59F02
      Related
      ENSP00000268261, OTTHUMP00000160109, ENST00000268261, OTTHUMT00000251904
      Conserved Domains (2) summary
      cd01427
      Location:892
      Blast Score: 118
      HAD_like; Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, ...
      TIGR01484
      Location:10221
      Blast Score: 191
      HAD-SF-IIB; HAD-superfamily hydrolase, subfamily IIB

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p10 Primary Assembly

      Range
      8891670..8943194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      8814114..8864329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018927.1 Alternate CHM1_1.0

      Range
      8788128..8839675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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