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GPC6 glypican 6 [ Bos taurus (cattle) ]

Gene ID: 536153, updated on 5-Mar-2024

Summary

Gene symbol
GPC6
Gene description
glypican 6
See related
BGD:BT26015
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (67702246..68933809)

Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene glypican 5 Neighboring gene microRNA mir-2285cw-1 Neighboring gene MAPK/MAK/MRK overlapping kinase-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene protein kish-A-like Neighboring gene dopachrome tautomerase

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

General gene information

Markers

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081730.2NP_001075199.2  glypican-6 precursor

    Status: VALIDATED

    Source sequence(s)
    NKLS02000012
    Conserved Domains (1) summary
    pfam01153
    Location:23548
    Glypican

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    67702246..68933809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059892082.1XP_059748065.1  glypican-6 isoform X1