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Nono non-POU-domain-containing, octamer binding protein [ Mus musculus (house mouse) ]

Gene ID: 53610, updated on 7-Feb-2016
Official Symbol
Nonoprovided by MGI
Official Full Name
non-POU-domain-containing, octamer binding proteinprovided by MGI
Primary source
MGI:MGI:1855692
See related
Ensembl:ENSMUSG00000031311; Vega:OTTMUSG00000018195
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
nonA; NRB54; P54NRB; AA407051; AV149256
Orthologs
See Nono in Epigenomics, MapViewer
Location:
X; X D
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) X NC_000086.7 (101429560..101448593)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (98624990..98643932)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene gap junction protein, beta 1 Neighboring gene zinc finger, MYM-type 3 Neighboring gene integrin beta 1 binding protein 2 Neighboring gene anaphase promoting complex subunit 13 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (4) 
  • mRNA processing, organism-specific biosystem (from WikiPathways)
    mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC103109

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II distal enhancer sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
core promoter binding IDA
Inferred from Direct Assay
more info
PubMed 
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
DNA recombination IEA
Inferred from Electronic Annotation
more info
 
DNA repair IEA
Inferred from Electronic Annotation
more info
 
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
circadian rhythm ISO
Inferred from Sequence Orthology
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
rhythmic process IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
RNA polymerase II transcription factor complex IDA
Inferred from Direct Assay
more info
PubMed 
membrane ISO
Inferred from Sequence Orthology
more info
 
nuclear matrix ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
paraspeckles ISO
Inferred from Sequence Orthology
more info
PubMed 
Preferred Names
non-POU domain-containing octamer-binding protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252518.1NP_001239447.1  non-POU domain-containing octamer-binding protein

    See identical proteins and their annotated locations for NP_001239447.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK033201, AL831722, CJ180326
    Consensus CDS
    CCDS30316.1
    UniProtKB/TrEMBL
    Q4FK11
    UniProtKB/Swiss-Prot
    Q99K48
    Conserved Domains (4) summary
    smart00360
    Location:77143
    RRM; RNA recognition motif
    cd12946
    Location:221313
    NOPS_p54nrb_PSF_PSPC1; NOPS domain, including C-terminal coiled-coil region, in p54nrb/PSF/PSPC1 family proteins
    cd12588
    Location:75145
    RRM1_p54nrb; RNA recognition motif 1 in vertebrate 54 kDa nuclear RNA- and DNA-binding protein (p54nrb)
    cl17169
    Location:151230
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_023144.2NP_075633.2  non-POU domain-containing octamer-binding protein

    See identical proteins and their annotated locations for NP_075633.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL831722, BC083074, CJ180326
    Consensus CDS
    CCDS30316.1
    UniProtKB/TrEMBL
    Q4FK11
    UniProtKB/Swiss-Prot
    Q99K48
    Related
    ENSMUSP00000033673, OTTMUSP00000019724, ENSMUST00000033673, OTTMUST00000043923
    Conserved Domains (4) summary
    smart00360
    Location:77143
    RRM; RNA recognition motif
    cd12946
    Location:221313
    NOPS_p54nrb_PSF_PSPC1; NOPS domain, including C-terminal coiled-coil region, in p54nrb/PSF/PSPC1 family proteins
    cd12588
    Location:75145
    RRM1_p54nrb; RNA recognition motif 1 in vertebrate 54 kDa nuclear RNA- and DNA-binding protein (p54nrb)
    cl17169
    Location:151230
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p3 C57BL/6J

    Range
    101429560..101448593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528138.1XP_006528201.1  

    See identical proteins and their annotated locations for XP_006528201.1

    Conserved Domains (4) summary
    smart00360
    Location:77143
    RRM; RNA recognition motif
    cd12946
    Location:221313
    NOPS_p54nrb_PSF_PSPC1; NOPS domain, including C-terminal coiled-coil region, in p54nrb/PSF/PSPC1 family proteins
    cd12588
    Location:75145
    RRM1_p54nrb; RNA recognition motif 1 in vertebrate 54 kDa nuclear RNA- and DNA-binding protein (p54nrb)
    cl17169
    Location:151230
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_011247630.1XP_011245932.1  

    See identical proteins and their annotated locations for XP_011245932.1

    Conserved Domains (4) summary
    smart00360
    Location:77143
    RRM; RNA recognition motif
    cd12946
    Location:221313
    NOPS_p54nrb_PSF_PSPC1; NOPS domain, including C-terminal coiled-coil region, in p54nrb/PSF/PSPC1 family proteins
    cd12588
    Location:75145
    RRM1_p54nrb; RNA recognition motif 1 in vertebrate 54 kDa nuclear RNA- and DNA-binding protein (p54nrb)
    cl17169
    Location:151230
    RRM_SF; RNA recognition motif (RRM) superfamily

Alternate Mm_Celera

Genomic

  1. AC_000042.1 Alternate Mm_Celera

    Range
    88346919..88366346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)