Format

Send to:

Choose Destination

Snrpa small nuclear ribonucleoprotein polypeptide A [ Mus musculus (house mouse) ]

Gene ID: 53607, updated on 8-May-2016
Official Symbol
Snrpaprovided by MGI
Official Full Name
small nuclear ribonucleoprotein polypeptide Aprovided by MGI
Primary source
MGI:MGI:1855690
See related
Ensembl:ENSMUSG00000061479 Vega:OTTMUSG00000031830
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
U1A; U1-A; Rnu1a1; Rnu1a-1; C430021M15Rik
Orthologs
Location:
7; 7 A3
Exon count:
7
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (27187006..27196271, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (27972025..27981290, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene RAB4B, member RAS oncogene family Neighboring gene predicted gene, 38971 Neighboring gene melanoma inhibitory activity Neighboring gene cDNA sequence BC024978 Neighboring gene microRNA 1191 Neighboring gene inositol 1,4,5-trisphosphate 3-kinase C

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
U1 snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
snRNA binding IEA
Inferred from Electronic Annotation
more info
 
snRNA stem-loop binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
U1 small nuclear ribonucleoprotein A
Names
U1 snRNP A
protein A of the U1 small nuclear RNA

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046637.1NP_001040102.1  U1 small nuclear ribonucleoprotein A

    See identical proteins and their annotated locations for NP_001040102.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AC157561, AI851424, AW541778, CX565356
    Consensus CDS
    CCDS21014.1
    UniProtKB/Swiss-Prot
    Q62189
    Related
    ENSMUSP00000131897, ENSMUST00000163311
    Conserved Domains (3) summary
    smart00360
    Location:1790
    RRM; RNA recognition motif
    cd12477
    Location:13101
    RRM1_U1A; RNA recognition motif 1 found in vertebrate U1 small nuclear ribonucleoprotein A (U1A)
    cd12480
    Location:208287
    RRM2_U1A; RNA recognition motif 2 found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)
  2. NM_001285825.1NP_001272754.1  U1 small nuclear ribonucleoprotein A

    See identical proteins and their annotated locations for NP_001272754.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AI851424, CA552113, CX206945, DV650448
    Consensus CDS
    CCDS21014.1
    UniProtKB/Swiss-Prot
    Q62189
    Related
    ENSMUSP00000113678, OTTMUSP00000042024, ENSMUST00000122202, OTTMUST00000078920
    Conserved Domains (3) summary
    smart00360
    Location:1790
    RRM; RNA recognition motif
    cd12477
    Location:13101
    RRM1_U1A; RNA recognition motif 1 found in vertebrate U1 small nuclear ribonucleoprotein A (U1A)
    cd12480
    Location:208287
    RRM2_U1A; RNA recognition motif 2 found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)
  3. NM_015782.3NP_056597.3  U1 small nuclear ribonucleoprotein A

    See identical proteins and their annotated locations for NP_056597.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AI851424, BC096648, CX206945
    Consensus CDS
    CCDS21014.1
    UniProtKB/Swiss-Prot
    Q62189
    Related
    ENSMUSP00000079228, OTTMUSP00000042023, ENSMUST00000080356, OTTMUST00000078919
    Conserved Domains (3) summary
    smart00360
    Location:1790
    RRM; RNA recognition motif
    cd12477
    Location:13101
    RRM1_U1A; RNA recognition motif 1 found in vertebrate U1 small nuclear ribonucleoprotein A (U1A)
    cd12480
    Location:208287
    RRM2_U1A; RNA recognition motif 2 found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

    Range
    27187006..27196271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000029.1 Alternate Mm_Celera

    Range
    21763790..21773055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)