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Pdlim3 PDZ and LIM domain 3 [ Mus musculus (house mouse) ]

Gene ID: 53318, updated on 8-May-2016
Official Symbol
Pdlim3provided by MGI
Official Full Name
PDZ and LIM domain 3provided by MGI
Primary source
MGI:MGI:1859274
See related
Ensembl:ENSMUSG00000031636
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ALP; Actn2lp; AI463105
Orthologs
Location:
8; 8 B1.1
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 8 NC_000074.6 (45885453..45919548)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (46970839..47004900)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene sorbin and SH3 domain containing 2 Neighboring gene predicted gene, 30635 Neighboring gene sorbin and SH3 domain containing 2, opposite strand Neighboring gene RIKEN cDNA 1700029J07 gene Neighboring gene coiled-coil domain containing 110 Neighboring gene UFM1-specific peptidase 2 Neighboring gene ankyrin repeat domain 37

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
cytoskeletal protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of muscle IDA
Inferred from Direct Assay
more info
PubMed 
structural constituent of muscle TAS
Traceable Author Statement
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
actin filament organization IDA
Inferred from Direct Assay
more info
PubMed 
heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
NOT skeletal muscle tissue development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Z disc TAS
Traceable Author Statement
more info
PubMed 
actin cytoskeleton IPI
Inferred from Physical Interaction
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
PDZ and LIM domain protein 3
Names
actinin alpha 2 associated LIM protein
actinin-associated LIM protein
alpha-actinin-2-associated LIM protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016798.3NP_058078.1  PDZ and LIM domain protein 3

    See identical proteins and their annotated locations for NP_058078.1

    Status: PROVISIONAL

    Source sequence(s)
    AC113469, AC114558
    Consensus CDS
    CCDS22281.1
    UniProtKB/Swiss-Prot
    O70209
    Related
    ENSMUSP00000034053, ENSMUST00000034053
    Conserved Domains (3) summary
    smart00735
    Location:137162
    ZM; ZASP-like motif
    cd09450
    Location:246298
    LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
    cd00992
    Location:280
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p3 C57BL/6J

    Range
    45885453..45919548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509465.1XP_006509528.1  

    See identical proteins and their annotated locations for XP_006509528.1

    Conserved Domains (3) summary
    smart00735
    Location:184209
    ZM; ZASP-like motif
    cd09450
    Location:294346
    LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
    cd00992
    Location:280
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

Alternate Mm_Celera

Genomic

  1. AC_000030.1 Alternate Mm_Celera

    Range
    48569007..48602415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)