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ALMS1 ALMS1 centrosome and basal body associated protein [ Bos taurus (cattle) ]

Gene ID: 533055, updated on 5-Mar-2024

Summary

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Official Symbol
ALMS1provided by VGNC
Official Full Name
ALMS1 centrosome and basal body associated proteinprovided by VGNC
Primary source
VGNC:VGNC:54402
See related
BGD:BT24154; Ensembl:ENSBTAG00000011172
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (10889151..11079814, complement)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene TP53RK binding protein Neighboring gene N-acetyltransferase 8 (putative) Neighboring gene F-actin-capping protein subunit alpha-2-like Neighboring gene early growth response 4 Neighboring gene F-box protein 41

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of centriole replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centrosome-associated protein ALMS1
Names
Alstrom syndrome 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    10889151..11079814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010809860.4 → XP_010808162.2  centrosome-associated protein ALMS1 isoform X6

    UniProtKB/TrEMBL
    A0A3Q1MPQ5
    Related
    ENSBTAP00000071644.2, ENSBTAT00000084254.2
    Conserved Domains (1) summary
    pfam15309
    Location:3609 → 3740
    ALMS_motif; ALMS motif

  2. XM_010809855.4 → XP_010808157.2  centrosome-associated protein ALMS1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MPQ5
    Conserved Domains (1) summary
    pfam15309
    Location:4181 → 4312
    ALMS_motif; ALMS motif

  3. XM_010809857.4 → XP_010808159.2  centrosome-associated protein ALMS1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1MPQ5
    Conserved Domains (1) summary
    pfam15309
    Location:4139 → 4270
    ALMS_motif; ALMS motif

  4. XM_010809856.4 → XP_010808158.2  centrosome-associated protein ALMS1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1MPQ5
    Conserved Domains (1) summary
    pfam15309
    Location:4141 → 4272
    ALMS_motif; ALMS motif

  5. XM_005212516.5 → XP_005212573.2  centrosome-associated protein ALMS1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MPQ5, E1B958
    Related
    ENSBTAP00000044487.4, ENSBTAT00000047267.5
    Conserved Domains (1) summary
    pfam15309
    Location:4196 → 4327
    ALMS_motif; ALMS motif

  6. XM_010809854.4 → XP_010808156.2  centrosome-associated protein ALMS1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MPQ5
    Conserved Domains (1) summary
    pfam15309
    Location:4198 → 4329
    ALMS_motif; ALMS motif

RNA

  1. XR_809620.4 RNA Sequence

Nucleotide Protein Strain
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