Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    PLAGL1 pleiomorphic adenoma gene-like 1 [ Homo sapiens (human) ]

    Gene ID: 5325, updated on 22-May-2013
    Official Symbol
    PLAGL1provided by HGNC
    Official Full Name
    pleiomorphic adenoma gene-like 1provided by HGNC
    Primary source
    HGNC:9046
    Locus tag
    RP3-468K18.1
    See related
    Ensembl:ENSG00000118495; HPRD:16010; MIM:603044; Vega:OTTHUMG00000015738
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ZAC; LOT1; ZAC1
    Summary
    This gene encodes a C2H2 zinc finger protein with transactivation and DNA-binding activities. It has been shown to have anti-proliferative properties, and thus thought to function as a tumor suppressor. In addition, overexpression of this gene during fetal development is believed to underlie the rare disorder, transient neonatal diabetes mellitus (TNDM). This gene is imprinted, with preferential expression of the paternal allele in many tissues, however, biallelic expression has been noted in peripheral blood leucocytes. A recent study reports that tissue-specific imprinting results from variable utilization of monoallelic and biallelic promoters. Many transcript variants differing in the 5' UTR and encoding two different isoforms, have been found for this gene. [provided by RefSeq, Oct 2010]
    Location :
    6q24-q25
    Sequence :
    Chromosome: 6; NC_000006.11 (144261437..144385735, complement)
    See PLAGL1 in Epigenomics, MapViewer

    Chromosome 6 - NC_000006.11Genomic Context describing neighboring genes Neighboring gene LTV1 homolog (S. cerevisiae) Neighboring gene zinc finger, C2HC-type containing 1B Neighboring gene hydatidiform mole associated and imprinted (non-protein coding) Neighboring gene FK506 binding protein 7 pseudogene Neighboring gene splicing factor 3b, subunit 5, 10kDa Neighboring gene mitochondrial ribosomal protein L42 pseudogene 3

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Transient neonatal diabetes mellitus 1

    Summary from GeneReviews: Diabetes Mellitus, 6q24-Related Transient Neonatal Go to GeneReviews

    Disease Characteristics
    6q24-related transient neonatal diabetes mellitus (6q24-TNDM) is defined as transient neonatal diabetes mellitus caused by genetic aberrations of the imprinted locus at 6q24. The cardinal features are: severe intrauterine growth retardation, hyperglycemia that begins in the neonatal period in a term infant and resolves by age 18 months, dehydration, and absence of ketoacidosis. Macroglossia and umbilical hernia are often present. In the subset of children with ZFP57 mutations, other manifestations can include structural brain abnormalities, developmental delay, and congenital heart disease. Diabetes mellitus usually starts within the first week of life and lasts on average three months but can last over a year. Although insulin is usually required initially, the need for insulin gradually declines over time. Intermittent episodes of hyperglycemia may occur in childhood, particularly during intercurrent illnesses. Diabetes mellitus may recur in adolescence or later in adulthood. Women who have had 6q24-TNDM are at risk for relapse during pregnancy.
    Diagnosis Testing
    6q24-TNDM is caused by overexpression of the imprinted genes at 6q24 (PLAGL1 [ZAC] and HYMAI). A 'differentially methylated region' (DMR) is present within the shared promoter of these genes. Normally, expression of the maternal alleles of PLAGL1 and HYMAI are silenced by DMR methylation and only the paternal alleles PLAGL1 and HYMAI are expressed. Three different genetic mechanisms result in twice the normal dosage of these two genes and cause 6q24-TNDM: Paternal uniparental disomy of chromosome 6 (41%); Duplication of 6q24 on the paternal allele (29%); and Hypomethylation of the maternal DMR resulting in inappropriate expression of the maternal PLAGL1 and HYMAI alleles (30%). Maternal PLAGL1/HYMAI DMR hypomethylation may result from an isolated imprinting mutation or as part of a more generalized defect termed 'hypomethylation at imprinted loci' (HIL). Homozygous or compound heterozygous ZFP57 mutations account for almost half of TNDM-HIL; the other causes of HIL are not known. Rapid testing is available on a clinical basis to confirm the diagnosis of 6q24-TNDM by detecting methylation changes resulting from any of the three mechanisms of disease causation. Additional clinical testing can detect paternal UPD6 and paternal 6q24 duplication. Molecular genetic testing of ZFP57 is available on a limited clinical basis.
    Genetic Counseling
    The risk to sibs and offspring of a proband of having 6q24-TNDM or of developing diabetes later in life depends on the genetic mechanism in the family. Recurrence risk counseling by a genetics professional is strongly recommended. 6q24-TNDM caused by paternal UPD6 is typically a de novo, non-recurrent event. 6q24-TNDM caused by paternal dup6q24 can occur de novo, be inherited in an autosomal dominant manner, or be inherited as a part of a complex chromosome rearrangement; TNDM caused by an inherited dup6q24 may recur in sibs and offspring of a proband if the duplication is inherited from the father. Prenatal diagnosis of paternal dup6q24 is possible in pregnancies at risk for a structural chromosome abnormality. TIDM-HIL inherited in an autosomal recessive manner when caused by mutations in ZFP57; however, the phenotype of homozygous or compound heterozygous sibs is variable and cannot be predicted by molecular genetic testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q9UM63 Q9UM63 PLAGL1    HPRD  PubMed  
    Q9UM63 P84022 SMAD3    HPRD  PubMed  
    Q9UM63 P04637 TP53    HPRD  PubMed  
    BioGRID:111341 BioGRID:107777 CREBBP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:111341 BioGRID:107985 DAXX    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:111341 BioGRID:108347 EP300    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111341 BioGRID:109315 HDAC1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111341 BioGRID:114523 PIAS2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:111341 BioGRID:111384 PML    BioGRID  PubMed Reconstituted Complex 
    BioGRID:111341 BioGRID:110263 SMAD3    BioGRID  PubMed Two-hybrid 
    BioGRID:111341 BioGRID:113010 TP53    BioGRID  PubMed Phenotypic Enhancement; Reconstituted Complex 
    BioGRID:111341 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111341 BioGRID:113177 UBE2I    BioGRID  PubMed Reconstituted Complex; Two-hybrid 

    Markers

    Homology

    Clone Names

    • MGC126275, MGC126276, DKFZp781P1017

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    sequence-specific DNA binding RNA polymerase II transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell cycle arrest TAS
    Traceable Author Statement
    more info
    PubMed 
    cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    induction of apoptosis TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription from RNA polymerase II promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Preferred Names
    zinc finger protein PLAGL1
    Names
    zinc finger protein PLAGL1
    LOT-1
    PLAG-like 1
    tumor supressor ZAC
    lost on transformation 1
    pleiomorphic adenoma-like protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009384.1 RefSeqGene

      Range
      5001..129299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001080951.1NP_001074420.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and contains an alternate exon in the CDS compared to variant 1. The resulting isoform (2) is longer and has an extended N-terminus compared to isoform 1. Variants 2, 3, 4, 5, and 6 all encode the same isoform.
      Source sequence(s)
      AI741398, AJ311395, DA991276, EF100448
      Consensus CDS
      CCDS5202.1
      UniProtKB/TrEMBL
      A1YLA1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000400929, ENST00000444202
      Conserved Domains (1) summary
      pfam13465
      Location:4973
      Blast Score: 88
      zf-H2C2_2; Zinc-finger double domain
    2. NM_001080952.1NP_001074421.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and contains an alternate exon in the CDS compared to variant 1. The resulting isoform (2) is longer and has an extended N-terminus compared to isoform 1. Variants 2, 3, 4, 5, and 6 all encode the same isoform.
      Source sequence(s)
      AI741398, AJ311395, DA446007, DA549753, EF100448, EF100452
      Consensus CDS
      CCDS5202.1
      UniProtKB/TrEMBL
      A1YLA1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000398409, ENST00000429150
      Conserved Domains (1) summary
      pfam13465
      Location:4973
      Blast Score: 88
      zf-H2C2_2; Zinc-finger double domain
    3. NM_001080953.1NP_001074422.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR and contains an alternate exon in the CDS compared to variant 1. The resulting isoform (2) is longer and has an extended N-terminus compared to isoform 1. Variants 2, 3, 4, 5, and 6 all encode the same isoform.
      Source sequence(s)
      AI741398, AJ311395, DA446007, DA549753, EF100448, EF100450
      Consensus CDS
      CCDS5202.1
      UniProtKB/TrEMBL
      A1YLA1
      UniProtKB/Swiss-Prot
      Q9UM63
      Conserved Domains (1) summary
      pfam13465
      Location:4973
      Blast Score: 88
      zf-H2C2_2; Zinc-finger double domain
    4. NM_001080954.1NP_001074423.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) differs in the 5' UTR and contains an alternate exon in the CDS compared to variant 1. The resulting isoform (2) is longer and has an extended N-terminus compared to isoform 1. Variants 2, 3, 4, 5, and 6 all encode the same isoform.
      Source sequence(s)
      AI741398, AJ311395, DA446007, DA549753, DA595200, EF100448, EF100449
      Consensus CDS
      CCDS5202.1
      UniProtKB/TrEMBL
      A1YLA1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000400060, ENST00000416623
      Conserved Domains (1) summary
      pfam13465
      Location:4973
      Blast Score: 88
      zf-H2C2_2; Zinc-finger double domain
    5. NM_001080955.1NP_001074424.1  zinc finger protein PLAGL1 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. Variants 1, 7, and 8 all encode the same isoform (1).
      Source sequence(s)
      AI741398, AJ311395, DA991276, EF100440
      Consensus CDS
      CCDS5203.1
      UniProtKB/TrEMBL
      A1YLA2
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000392418, ENST00000437412
      Conserved Domains (1) summary
      cl15478
      Location:1132
      Blast Score: 81
      zf-C2H2; Zinc finger, C2H2 type
    6. NM_001080956.1NP_001074425.1  zinc finger protein PLAGL1 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8) differs in the 5' UTR compared to variant 1. Variants 1, 7, and 8 all encode the same isoform (1).
      Source sequence(s)
      AI741398, AJ311395, DA426770, DA446007, DA549753
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      Conserved Domains (1) summary
      cl15478
      Location:1132
      Blast Score: 81
      zf-C2H2; Zinc finger, C2H2 type
    7. NM_002656.3NP_002647.2  zinc finger protein PLAGL1 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the shorter isoform (1). Variants 1, 7, and 8 all encode the same isoform.
      Source sequence(s)
      AI741398, AJ311395, DA391124, DA446007, DA549753
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000376124, ENST00000392307
      Conserved Domains (1) summary
      cl15478
      Location:1132
      Blast Score: 81
      zf-C2H2; Zinc finger, C2H2 type
    8. NM_006718.3NP_006709.2  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and contains an alternate exon in the CDS compared to variant 1. The resulting isoform (2) is longer and has an extended N-terminus compared to isoform 1. Variants 2, 3, 4, 5, and 6 all encode the same isoform.
      Source sequence(s)
      AI741398, AJ311395, DA391124, DA446007, DA549753, EF100447
      Consensus CDS
      CCDS5202.1
      UniProtKB/TrEMBL
      A1YLA1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000376125, ENST00000392309
      Conserved Domains (1) summary
      pfam13465
      Location:4973
      Blast Score: 88
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000006.11 Reference GRCh37.p10 Primary Assembly

      Range
      144261437..144385735, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000138.1 Alternate HuRef

      Range
      141825091..141949488, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018917.1 Alternate CHM1_1.0

      Range
      144259894..144384213, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...