SNRPE small nuclear ribonucleoprotein polypeptide E [Bos taurus (cattle)] - Gene

Summary

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Symbol: SNRPE
Full Name: small nuclear ribonucleoprotein polypeptide E
Locus tag: BOS_15536
See related: BGD:BT26953
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos

Genomic context

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Location :: chromosome: 16

Sequence :: Chromosome: 16; AC_000173.1 (1453049..1459010)

See SNRPE in MapViewer

Chromosome 16 - AC_000173.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence

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Go to reference sequence details

Bibliography

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GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from BioSystems

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Sm core complex, organism-specific biosystem (from KEGG)
Sm core complex, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
Spliceosome, organism-specific biosystem (from KEGG)
Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
Spliceosome, conserved biosystem (from KEGG)
Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
Spliceosome, 35S U5-snRNP, organism-specific biosystem (from KEGG)
Spliceosome, 35S U5-snRNP, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
Spliceosome, U1-snRNP, organism-specific biosystem (from KEGG)
Spliceosome, U1-snRNP, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
Spliceosome, U2-snRNP, organism-specific biosystem (from KEGG)
Spliceosome, U2-snRNP, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
Spliceosome, U4/U6.U5 tri-snRNP, organism-specific biosystem (from KEGG)
Spliceosome, U4/U6.U5 tri-snRNP, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
mRNA processing, organism-specific biosystem (from WikiPathways)
mRNA processing, organism-specific biosystemThis process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' pol...

General gene information

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Homology

Homologs of the SNRPE gene: The SNRPE gene is conserved in human, chimpanzee, Rhesus monkey, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
U7 snRNP	ISS Inferred from Sequence or Structural Similarity more info
spliceosomal complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: small nuclear ribonucleoprotein E

Names: small nuclear ribonucleoprotein E; smE; sm-E; snRNP-E; sm protein E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001083459.2 → NP_001076928.1 small nuclear ribonucleoprotein E

Status: PROVISIONAL

Source sequence(s)

BC114915

UniProtKB/Swiss-Prot

A4FUI2

Conserved Domains (1) summary

cd01718
Location:17 – 89
Blast Score: 386

Sm_E; Sm protein E

RefSeqs of Annotated Genomes: Build 6.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_taurus_UMD_3.1 Primary Assembly

Genomic

AC_000173.1 Reference Bos_taurus_UMD_3.1 Primary Assembly

Range

1453049..1459010

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Btau_4.6.1

Genomic

NC_007314.4 Alternate Btau_4.6.1

Range

624490..630451

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Nucleotide		Protein	Strain
Heading	Accession and Version	Protein	Strain
genomic	AAFC03076073.1 (55490..61451)	None
genomic	DAAA02041908.1 (211027..216988)	None
genomic	GJ062448.1	DAA21501.1	Hereford
mRNA	BC114915.1	AAI14916.1	Hereford