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    PHKB phosphorylase kinase, beta [ Homo sapiens (human) ]

    Gene ID: 5257, updated on 10-Jun-2013
    Official Symbol
    PHKBprovided by HGNC
    Official Full Name
    phosphorylase kinase, betaprovided by HGNC
    Primary source
    HGNC:8927
    See related
    Ensembl:ENSG00000102893; HPRD:01407; MIM:172490; Vega:OTTHUMG00000133102
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Phosphorylase kinase is a polymer of 16 subunits, four each of alpha, beta, gamma and delta. The alpha subunit includes the skeletal muscle and hepatic isoforms, encoded by two different genes. The beta subunit is the same in both the muscle and hepatic isoforms, encoded by this gene, which is a member of the phosphorylase b kinase regulatory subunit family. The gamma subunit also includes the skeletal muscle and hepatic isoforms, encoded by two different genes. The delta subunit is a calmodulin and can be encoded by three different genes. The gamma subunits contain the active site of the enzyme, whereas the alpha and beta subunits have regulatory functions controlled by phosphorylation. The delta subunit mediates the dependence of the enzyme on calcium concentration. Mutations in this gene cause glycogen storage disease type 9B, also known as phosphorylase kinase deficiency of liver and muscle. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene. Two pseudogenes have been found on chromosomes 14 and 20, respectively.[provided by RefSeq, Feb 2010]
    Location :
    16q12-q13
    Sequence :
    Chromosome: 16; NC_000016.9 (47495210..47735434)
    See PHKB in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene ribosomal protein L23a pseudogene 72 Neighboring gene integrin alpha FG-GAP repeat containing 1 Neighboring gene proteasome (prosome, macropain) subunit, beta type, 5 pseudogene Neighboring gene Rho GTPase activating protein 20 pseudogene Neighboring gene eukaryotic translation initiation factor 4B pseudogene 5 Neighboring gene uncharacterized LOC100507534 Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 12

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Glycogen storage disease IXb

    Summary from GeneReviews: Phosphorylase Kinase Deficiency Go to GeneReviews

    Disease Characteristics
    Phosphorylase kinase (PhK) deficiency causing glycogen storage disease type IX (GSD IX) results from deficiency of the enzyme phosphorylase b kinase, which has a major regulatory role in the breakdown of glycogen. The two types of PhK deficiency are liver PhK deficiency (characterized by early childhood onset of hepatomegaly and growth retardation, and often, but not always, fasting ketosis and hypoglycemia) and muscle PhK deficiency, which is considerably rarer (characterized by any of the following: exercise intolerance, myalgia, muscle cramps, myoglobinuria, and progressive muscle weakness). Symptoms and biochemical abnormalities of liver PhK deficiency are thought to improve with age.
    Diagnosis Testing
    The enzyme PhK comprises four copies each of four subunits (alpha, beta, gamma, and delta). Mutations in PHKA1, encoding subunit alpha, cause the rare X-linked disorder muscle PhK deficiency; mutations in PHKA2, also encoding subunit alpha, cause the most common form, liver PhK deficiency (X-linked liver glycogenosis); mutations in PHKB, encoding subunit beta, cause autosomal recessive PhK deficiency in both liver and muscle; and mutations in PHKG2, encoding subunit gamma, cause autosomal recessive liver PhK deficiency. Diagnosis is based on clinical findings, assay of PhK activity in erythrocytes, or liver or muscle tissues (depending upon presentation) and confirmatory findings on molecular genetic testing.
    Genetic Counseling
    PHKA2-related liver PhK deficiency and PHKA1-related muscle PhK deficiency are inherited in an X-linked manner. PHKB-related liver and muscle PhK deficiency and PHKG2-related liver PhK deficiency are inherited in an autosomal recessive manner. X-linked inheritance: If the mother is a carrier, the chance of transmitting it in each pregnancy is 50%. Males who inherit the mutation will be affected; females who inherit the mutation will be carriers. Affected males pass the disease-causing mutation to all of their daughters and none of their sons. Carrier testing for at-risk female relatives and prenatal testing for pregnancies at risk are possible if the disease-causing mutation in the family has been identified. Autosomal recessive inheritance: At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at risk are possible if the disease-causing mutations in the family have been identified.
    References
    Protein Gene Interaction Pubs
    pol gag-pol The beta subunit of phosphorylase kinase is cleaved at leu678-pro679 by HIV-1 protease PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    Q93100 Q9GZN8 C20orf27    HPRD  PubMed  
    BioGRID:111275 BioGRID:107141 BRAF    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111275 BioGRID:120312 C20orf27    BioGRID  PubMed Two-hybrid 
    BioGRID:111275 BioGRID:109315 HDAC1    BioGRID  PubMed Negative Genetic 
    BioGRID:111275 BioGRID:115106 HDAC4    BioGRID  PubMed Negative Genetic 
    BioGRID:111275 BioGRID:109424 HNRNPC    BioGRID  PubMed Two-hybrid 
    BioGRID:111275 BioGRID:211904 Ndc80    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111275 BioGRID:125936 RAVER1    BioGRID  PubMed Co-fractionation 
    BioGRID:111275 BioGRID:113185 UBE3A    BioGRID  PubMed Affinity Capture-MS 
    • Calcium signaling pathway, organism-specific biosystem (from KEGG)
      Calcium signaling pathway, organism-specific biosystemCa2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this...
    • Calcium signaling pathway, conserved biosystem (from KEGG)
      Calcium signaling pathway, conserved biosystemCa2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this...
    • Glucose metabolism, organism-specific biosystem (from REACTOME)
      Glucose metabolism, organism-specific biosystemGlucose is the major form in which dietary sugars are made available to cells of the human body. Its breakdown is a major source of energy for all cells, and is essential for the brain and red blood ...
    • Glycogen Metabolism, organism-specific biosystem (from WikiPathways)
      Glycogen Metabolism, organism-specific biosystemGlycogen is a very large, branched polymer of glucose residues. Within skeletal musle and liver glucose is stored as glycogen. In the liver, glycogen synthesis and degradation are regulated to mainta...
    • Glycogen breakdown (glycogenolysis), organism-specific biosystem (from REACTOME)
      Glycogen breakdown (glycogenolysis), organism-specific biosystemGlycogen breakdown occurs via the same chemical steps in all tissues but is separately regulated via tissue specific isozymes and signaling pathways that enable distinct physiological fates for liver...
    • Insulin signaling pathway, organism-specific biosystem (from KEGG)
      Insulin signaling pathway, organism-specific biosystemInsulin binding to its receptor results in the tyrosine phosphorylation of insulin receptor substrates (IRS) by the insulin receptor tyrosine kinase (INSR). This allows association of IRSs with the r...
    • Insulin signaling pathway, conserved biosystem (from KEGG)
      Insulin signaling pathway, conserved biosystemInsulin binding to its receptor results in the tyrosine phosphorylation of insulin receptor substrates (IRS) by the insulin receptor tyrosine kinase (INSR). This allows association of IRSs with the r...
    • Metabolism, organism-specific biosystem (from REACTOME)
      Metabolism, organism-specific biosystemMetabolic processes in human cells generate energy through the oxidation of molecules consumed in the diet and mediate the synthesis of diverse essential molecules not taken in the diet as well as th...
    • Metabolism of carbohydrates, organism-specific biosystem (from REACTOME)
      Metabolism of carbohydrates, organism-specific biosystemThese pathways together are responsible for: 1) the extraction of energy and carbon skeletons for biosyntheses from dietary sugars and related molecules; 2) the short-term storage of glucose in the b...

    Markers

    Homology

    Clone Names

    • FLJ41698, DKFZp781E15103

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    carbohydrate metabolic process TAS
    Traceable Author Statement
    more info
     
    generation of precursor metabolites and energy TAS
    Traceable Author Statement
    more info
    PubMed 
    glucose metabolic process TAS
    Traceable Author Statement
    more info
     
    glycogen catabolic process TAS
    Traceable Author Statement
    more info
     
    glycogen metabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytosol TAS
    Traceable Author Statement
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    phosphorylase b kinase regulatory subunit beta
    Names
    phosphorylase b kinase regulatory subunit beta
    phosphorylase kinase beta-subunit
    phosphorylase kinase subunit beta
    NP_000284.1
    NP_001027005.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016598.1 RefSeqGene

      Range
      5001..245225
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000293.2NP_000284.1  phosphorylase b kinase regulatory subunit beta isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a).
      Source sequence(s)
      AC007599, AC092374, X84908
      Consensus CDS
      CCDS10729.1
      UniProtKB/Swiss-Prot
      Q93100
      Related
      ENSP00000414345, ENST00000455779
      Conserved Domains (1) summary
      pfam00723
      Location:49259
      Blast Score: 382
      Glyco_hydro_15; Glycosyl hydrolases family 15
    2. NM_001031835.2NP_001027005.1  phosphorylase b kinase regulatory subunit beta isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) has an additional exon in the 5' region and an alternate exon in the 3' region, as compared to variant 1. The resulting isoform (b) is shorter and has an alternate N-terminus and a different segment in the C-terminal region, as compared to isoform a.
      Source sequence(s)
      AC007599, AC092374, BC033657
      Consensus CDS
      CCDS42161.1
      UniProtKB/Swiss-Prot
      Q93100
      Related
      ENSP00000299167, OTTHUMP00000164134, ENST00000299167, OTTHUMT00000256767
      Conserved Domains (1) summary
      pfam00723
      Location:42252
      Blast Score: 382
      Glyco_hydro_15; Glycosyl hydrolases family 15

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p10 Primary Assembly

      Range
      47495210..47735434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      33385772..33625996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018927.1 Alternate CHM1_1.0

      Range
      48506310..48746536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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