Display Settings:

Format

Send to:

Choose Destination

ZNF44 zinc finger protein 44 [ Homo sapiens (human) ]

Gene ID: 51710, updated on 25-Jul-2015
Official Symbol
ZNF44provided by HGNC
Official Full Name
zinc finger protein 44provided by HGNC
Primary source
HGNC:HGNC:13110
See related
Ensembl:ENSG00000197857; HPRD:01927; MIM:194542; Vega:OTTHUMG00000156424
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF; KOX7; ZNF55; ZNF58; GIOT-2; ZNF504
Orthologs
See ZNF44 in Epigenomics, MapViewer
Location:
19p13.2
Exon count:
10
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 19 NC_000019.10 (12247244..12294899, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12358059..12405714, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 136 Neighboring gene uncharacterized LOC100289333 Neighboring gene uncharacterized LOC101928574 Neighboring gene zinc finger protein ZnFP12 Neighboring gene ribosomal protein L28 pseudogene 5 Neighboring gene ribosomal protein S2 pseudogene 53 Neighboring gene zinc finger protein 563 Neighboring gene zinc finger protein 442

Products Interactant Other Gene Complex Source Pubs Description

Markers

Clone Names

  • DKFZp434F1811, DKFZp686L21136

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
zinc finger protein 44
Names
gonadotropin inducible transcription repressor-2
gonadotropin-inducible ovary transcription repressor 2
gonadotropin-inducible transcription repressor 2
zinc finger protein 55
zinc finger protein 58
zinc finger protein KOX7
zinc finger protein ZnFP12

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164276.1NP_001157748.1  zinc finger protein 44 isoform 1

    See identical proteins and their annotated locations for NP_001157748.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AA525756, AK297528, BC001868, BE766488
    Consensus CDS
    CCDS54223.1
    UniProtKB/Swiss-Prot
    P15621
    Related
    ENSP00000348419, OTTHUMP00000209861, ENST00000356109, OTTHUMT00000344132
    Conserved Domains (6) summary
    cd07765
    Location:5288
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:5288
    KRAB; krueppel associated box
    COG5048
    Location:244655
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:595619
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:582602
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:501518
    ZF_C2H2; Zn binding site [ion binding]
  2. NM_016264.3NP_057348.3  zinc finger protein 44 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment near the N-terminus, compared to isoform 1.
    Source sequence(s)
    AA525756, AC012618, BC001868, DA815414
    Consensus CDS
    CCDS45988.1
    UniProtKB/TrEMBL
    F8W7T7
    Conserved Domains (6) summary
    cd07765
    Location:440
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:440
    KRAB; krueppel associated box
    COG5048
    Location:196607
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:547571
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:534554
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:453470
    ZF_C2H2; Zn binding site [ion binding]

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p2 Primary Assembly

    Range
    12247244..12294899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011528067.1XP_011526369.1  

    Conserved Domains (6) summary
    cd07765
    Location:441
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:446
    KRAB; krueppel associated box
    COG5048
    Location:85511
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:297320
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:423443
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:479499
    ZF_C2H2; Zn binding site [ion binding]
  2. XM_011528065.1XP_011526367.1  

    Conserved Domains (4) summary
    COG5048
    Location:164575
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:515539
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:502522
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:421438
    ZF_C2H2; Zn binding site [ion binding]
  3. XM_011528063.1XP_011526365.1  

    Conserved Domains (6) summary
    cd07765
    Location:5288
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:5288
    KRAB; krueppel associated box
    COG5048
    Location:209587
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:595619
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:554574
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:387407
    ZF_C2H2; Zn binding site [ion binding]
  4. XM_005259934.2XP_005259991.1  

    See identical proteins and their annotated locations for XP_005259991.1

    Conserved Domains (4) summary
    COG5048
    Location:84495
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:435459
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:422442
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:341358
    ZF_C2H2; Zn binding site [ion binding]
  5. XM_011528062.1XP_011526364.1  

    Conserved Domains (6) summary
    cd07765
    Location:4278
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:4278
    KRAB; krueppel associated box
    COG5048
    Location:234645
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:585609
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:572592
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:491508
    ZF_C2H2; Zn binding site [ion binding]
  6. XM_011528066.1XP_011526368.1  

    Conserved Domains (4) summary
    COG5048
    Location:152563
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:503527
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:490510
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:409426
    ZF_C2H2; Zn binding site [ion binding]
  7. XM_006722768.2XP_006722831.1  

    See identical proteins and their annotated locations for XP_006722831.1

    Conserved Domains (4) summary
    COG5048
    Location:84495
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:435459
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:422442
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:341358
    ZF_C2H2; Zn binding site [ion binding]
  8. XM_011528064.1XP_011526366.1  

    Conserved Domains (6) summary
    cd07765
    Location:541
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:541
    KRAB; krueppel associated box
    COG5048
    Location:197608
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:548572
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:535555
    ZF_C2H2; Zn binding site [ion binding]
    sd00019
    Location:454471
    ZF_C2H2; Zn binding site [ion binding]

Alternate CHM1_1.1

Genomic

  1. NC_018930.2 Alternate CHM1_1.1

    Range
    12382438..12405522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)