RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_030012.1 RefSeqGene
- Range
- 4981..88079
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001244584.1 → NP_001231513.1 putative RNA-binding protein Luc7-like 2 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) is longer and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK297642, AU144525, BC017163
- UniProtKB/TrEMBL
-
B7Z4Q3
- UniProtKB/Swiss-Prot
-
Q9Y383
- Conserved Domains (2) summary
-
- COG5200
Location:89 – 294
Blast Score: 321
- LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
- cl05087
Location:9 – 101
Blast Score: 109
- Complex1_LYR_1; Complex1_LYR-like
-
NM_001244585.1 → NP_001231514.1 putative RNA-binding protein Luc7-like 2 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC083880, AK298166, AU144525, BC017163
- UniProtKB/TrEMBL
-
B7Z500
- UniProtKB/Swiss-Prot
-
Q9Y383
- Conserved Domains (1) summary
-
- COG5200
Location:14 – 225
Blast Score: 320
- LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
-
NM_016019.3 → NP_057103.2 putative RNA-binding protein Luc7-like 2 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
- Source sequence(s)
-
AU144525, BC050708, DB086483
- Consensus CDS
-
CCDS43656.1
- UniProtKB/Swiss-Prot
-
Q9Y383
- Related
- ENSP00000347005, OTTHUMP00000200420, ENST00000354926, OTTHUMT00000323618
- Conserved Domains (2) summary
-
- COG5200
Location:5 – 228
Blast Score: 353
- LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
- pfam03194
Location:4 – 233
Blast Score: 763
- LUC7; LUC7 N_terminus
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000007.13 Reference GRCh37.p5 Primary Assembly
- Range
- 139044634..139108200
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000139.1 Alternate HuRef
- Range
- 133354515..133418082
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CRA_TCAGchr7v2
Genomic
-
AC_000068.1 Alternate CRA_TCAGchr7v2
- Range
- 138389189..138452742
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)