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RTFDC1 replication termination factor 2 domain containing 1 [ Homo sapiens (human) ]

Gene ID: 51507, updated on 7-Dec-2014
Official Symbol
RTFDC1provided by HGNC
Official Full Name
replication termination factor 2 domain containing 1provided by HGNC
Primary source
HGNC:HGNC:15890
Locus tag
AD-007
See related
Ensembl:ENSG00000022277; HPRD:12769; Vega:OTTHUMG00000032801
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CDAO5; HSPC164; C20orf43; SHUJUN-3
See RTFDC1 in Epigenomics, MapViewer
Location:
20q13.31
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 20 NC_000020.11 (56468585..56518886)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (55043641..55093942)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene aurora kinase A Neighboring gene cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa Neighboring gene Cas scaffolding protein family member 4 Neighboring gene ribosomal protein L39 pseudogene Neighboring gene glucosaminyl (N-acetyl) transferase family member 7 Neighboring gene family with sequence similarity 209, member A Neighboring gene family with sequence similarity 209, member B

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
Preferred Names
protein RTF2 homolog
Names
protein RTF2 homolog
UPF0549 protein C20orf43
replication termination factor 2 domain-containing protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001283035.1NP_001269964.1  protein RTF2 homolog isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AA814039, AK302029, BC003359, BG468509, DC397043
    Consensus CDS
    CCDS63316.1
    UniProtKB/TrEMBL
    B4DXL5
    UniProtKB/Swiss-Prot
    Q9BY42
    Related
    ENSP00000023939, ENST00000023939
    Conserved Domains (1) summary
    pfam04641
    Location:1319
    Rtf2; Rtf2 RING-finger
  2. NM_001283036.1NP_001269965.1  protein RTF2 homolog isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (c) is shorter than isoform a.
    Source sequence(s)
    AA814039, AK225135, BC003359, BG468509, DC397043
    UniProtKB/Swiss-Prot
    Q9BY42
    Conserved Domains (1) summary
    pfam04641
    Location:1288
    Rtf2; Rtf2 RING-finger
  3. NM_001283037.1NP_001269966.1  protein RTF2 homolog isoform d

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate in-frame exon in the 5' coding region, and lacks an alternate exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (d) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AA814039, BC003359, BG468509, CR983692, DC397043
    Consensus CDS
    CCDS63317.1
    UniProtKB/TrEMBL
    A2A2L6
    UniProtKB/Swiss-Prot
    Q9BY42
    Related
    ENSP00000379220, OTTHUMP00000166074, ENST00000395881, OTTHUMT00000259433
    Conserved Domains (1) summary
    pfam04641
    Location:1198
    Rtf2; Rtf2 RING-finger
  4. NM_016407.4NP_057491.2  protein RTF2 homolog isoform b

    See proteins identical to NP_057491.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a.
    Source sequence(s)
    AA814039, BC003359, BG468509, DC397043
    Consensus CDS
    CCDS13453.1
    UniProtKB/Swiss-Prot
    Q9BY42
    Conserved Domains (1) summary
    pfam04641
    Location:1289
    Rtf2; Rtf2 RING-finger

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000020.11 

    Range
    56468585..56518886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018931.2 

    Range
    54944764..54995053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000152.1 

    Range
    51828350..51878628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)