Display Settings:

Format

Send to:

Choose Destination

    TH1L TH1-like (Drosophila) [ Homo sapiens ]

    Gene ID: 51497, updated on 20-May-2012

    Summary

    Official Symbol
    TH1Lprovided by HGNC
    Official Full Name
    TH1-like (Drosophila)provided by HGNC
    Primary source
    HGNC:15934
    Locus tag
    HSPC130
    See related
    Ensembl:ENSG00000101158; HPRD:16096; MIM:605297; Vega:OTTHUMG00000032861
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TH1; NELF-C; NELF-D; HSPC130
    Summary
    The NELF complex of proteins interacts with the DSIF protein complex to repress transcriptional elongation by RNA polymerase II. The protein encoded by this gene is an essential part of the NELF complex. Alternative translation initiation site usage results in the formation of two isoforms with different N-termini. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    20q13
    Sequence :
    Chromosome: 20; NC_000020.10 (57556311..57570188)
    See TH1L in Epigenomics, MapViewer

    Chromosome 20 - NC_000020.10Genomic Context describing neighboring genes Neighboring gene GNAS antisense RNA 1 (non-protein coding) Neighboring gene microRNA 298 Neighboring gene GNAS complex locus Neighboring gene cathepsin Z Neighboring gene tubulin, beta 1 class VI

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Tat tat NELF associates with HIV-1 Tat as part of the HIV-1 transcription elongation complex PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_057481.2 NP_001645.1 ARAF    BIND  PubMed A-RAF interacts with TH1. 
    Q8IXH7 Q13685 AAMP    HPRD  PubMed  
    Q8IXH7 P10398 ARAF    HPRD  PubMed  
    Q8IXH7 P59998 ARPC4    HPRD  PubMed  
    Q8IXH7 P31689 DNAJA1    HPRD  PubMed  
    Q8IXH7 Hypothetical protein FLJ35220 ENDOV    HPRD  PubMed  
    Q8IXH7 P07814 EPRS    HPRD  PubMed  
    Q8IXH7 Q7Z6J6 FRMD5    HPRD  PubMed  
    Q8IXH7 Q03013 GSTM4    HPRD  PubMed  
    Q8IXH7 Q96DB2 HDAC11    HPRD  PubMed  
    Q8IXH7 Q13330 MTA1    HPRD  PubMed  
    Q8IXH7 P84101 SERF2    HPRD  PubMed  
    Q8IXH7 Q13485 SMAD4    HPRD  PubMed  
    Q8IXH7 P42681 TXK    HPRD  PubMed  
    Q8IXH7 Q9H3P2 WHSC2    HPRD  PubMed  
    BioGRID:119572 BioGRID:106862 AR    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    NP_001645.1 ARAF    BIND  PubMed A-Raf interacts with an unspecified isoform of TH1. 
    BioGRID:119572 BioGRID:106864 ARAF    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:119572 BioGRID:115400 ARPC4    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:106966 ATP1A1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:107227 CACNA1A    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:117421 COBRA1    BioGRID  PubMed Affinity Capture-MS; Reconstituted Complex 
    BioGRID:119572 BioGRID:114693 COPB2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:110616 COX2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:107720 COX4I1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:114778 COX5A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:107722 COX5B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:107733 COX6B1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:107738 COX6C    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:109534 DNAJA1    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:117093 DNPEP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:108296 EIF4G1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:108372 EPRS    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:109203 GSTM4    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:122970 HDAC11    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:121775 KIAA1967    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:110344 MCM7    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:114562 MTA1    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:116459 PHB2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:113662 RDBP    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:119572 BioGRID:112119 RPS11    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:112122 RPS14    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:112145 RPS26    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:115471 SERF2    BioGRID  PubMed Two-hybrid 
    BioGRID:119572 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:119572 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:119572 BioGRID:113185 UBE3A    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:119572 BioGRID:113307 WHSC2    BioGRID  PubMed Affinity Capture-MS; Reconstituted Complex 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    gene expression TAS
    Traceable Author Statement
    more info
     
    negative regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of viral transcription TAS
    Traceable Author Statement
    more info
     
    transcription elongation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    negative elongation factor C/D
    Names
    negative elongation factor C/D
    NELF-C/D
    TH1-like protein
    trihydrophobin 1
    TH1 drosophila homolog
    negative elongation factor proteins C and D

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198976.1NP_945327.1  negative elongation factor C/D

      Status: REVIEWED

      Source sequence(s)
      AJ238379, BI459250, BM974193
      Consensus CDS
      CCDS13473.1
      UniProtKB/Swiss-Prot
      Q8IXH7
      Related
      ENSP00000342300, OTTHUMP00000031415, ENST00000344018, OTTHUMT00000079909
      Conserved Domains (1) summary
      pfam04858
      Location:43589
      Blast Score: 2349
      TH1; TH1 protein

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000020.10 Reference GRCh37.p5 Primary Assembly

      Range
      57556311..57570188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000152.1 Alternate HuRef

      Range
      54343234..54357094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_016397.2: Suppressed sequence

      Description
      NM_016397.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AL109840.24 CAC09368.1
    genomic CH471077.2 EAW75451.1
      EAW75452.1
      EAW75453.1
      EAW75454.1
      EAW75455.1
      EAW75456.1
    mRNA AA831111.1 None
    mRNA AF161479.1 AAF29094.1
    mRNA AJ238374.1 CAB64337.1
    mRNA AJ238375.1 CAB64373.1
    mRNA AJ238376.1 None
    mRNA AJ238379.1 CAB64339.1
    mRNA AK001316.1 BAA91618.1
    mRNA AK023310.1 BAB14519.1
    mRNA AK023927.1 BAB14729.1
    mRNA AK127431.1 None
    mRNA AK293410.1 BAG56917.1
    mRNA AK304310.1 BAG65163.1
    mRNA BC014952.1 AAH14952.1
    mRNA BI459250.1 None
    mRNA BM974193.1 None
    mRNA BX647417.1 None
    other-genetic JF432711.1 ADZ15928.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IXH7.2 GenPept UniProtKB/Swiss-Prot:Q8IXH7

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...