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Pmen_4053 AraC family transcriptional regulator [ Pseudomonas mendocina ymp ]

Gene ID: 5106350, updated on 6-Apr-2014
Gene symbol
Pmen_4053
Gene description
AraC family transcriptional regulator
Locus tag
Pmen_4053
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas mendocina ymp (strain: ymp)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Sequence :
NC_009439.1 (4438117..4438950, complement)

NC_009439.1Genomic Context describing neighboring genes Neighboring gene oxidoreductase alpha (molybdopterin) subunit Neighboring gene agmatinase Neighboring gene extracellular solute-binding protein Neighboring gene LysR family transcriptional regulator Neighboring gene hypothetical protein Neighboring gene NADPH-dependent FMN reductase

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Names
AraC family transcriptional regulator
YP_001189532.1
  • PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009439.1

    Range
    4438117..4438950, complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_001189532.1 AraC family transcriptional regulator [Pseudomonas mendocina ymp]

    See proteins identical to YP_001189532.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A4XZN4
    Conserved Domains (2) summary
    smart00342
    Location:19101
    Blast Score: 214
    HTH_ARAC; helix_turn_helix, arabinose operon control protein
    COG3708
    Location:128276
    Blast Score: 341
    COG3708; Uncharacterized protein conserved in bacteria [Function unknown]

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