These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001252406.2 → NP_001239335.1 zinc finger and BTB domain-containing protein 7B isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longer isoform (2).
- Source sequence(s)
-
AI270090, AK304762, AL451085, BC012070, CV572166, DA970906, DB241444
- UniProtKB/TrEMBL
-
B4E3K5
- UniProtKB/Swiss-Prot
-
O15156
- Conserved Domains (2) summary
-
- pfam13465
Location:397 – 419
Blast Score: 102
- zf-H2C2_2; Zinc-finger double domain
- cl02518
Location:58 – 176
Blast Score: 269
- BTB; BTB/POZ domain
-
NM_001256455.1 → NP_001243384.1 zinc finger and BTB domain-containing protein 7B isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks two alternate exons in the 5' UTR and 5' coding region, and uses a downstream in-frame start codon, comapred to variant 3. The encoded isoform (1) is shorter at the N-terminus, compared to isoform 2.
- Source sequence(s)
-
AI270090, AL451085, BC012070, CV572166, DA970906
- Consensus CDS
-
CCDS1081.1
- UniProtKB/Swiss-Prot
-
O15156
- Conserved Domains (2) summary
-
- pfam13465
Location:363 – 385
Blast Score: 100
- zf-H2C2_2; Zinc-finger double domain
- cl02518
Location:24 – 142
Blast Score: 262
- BTB; BTB/POZ domain
RNA
-
NR_045515.1 RNA Sequence
- Description
- Transcript Variant: This variant (4) contains alternate 5' exon structure, compared to variant 3. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest in-frame ORF. Translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF007833, AI270090, AK127884, AL451085, AW663133, BC012070, BX114870, CR749303, DA970906
-
NR_046206.1 RNA Sequence
- Description
- Transcript Variant: This variant (2) contains alternate exon structure in the 5' and central regions, compared to variant 3. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest in-frame ORF. Translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI270090, AK291619, AL451085, DA970906
-
NR_049765.1 RNA Sequence
- Description
- Transcript Variant: This variant (1) lacks an alternate segment and two alternate exons in the 5' region, compared to variant 3. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest in-frame ORF. Translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI270090, AL451085, BC012070, DA970906
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000001.10 Reference GRCh37.p5 Primary Assembly
- Range
- 154975112..154990999
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000133.1 Alternate HuRef
- Range
- 126337222..126352991
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)