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VMP1 vacuole membrane protein 1 [ Bos taurus (cattle) ]

Gene ID: 508631, updated on 5-Mar-2024

Summary

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Official Symbol
VMP1provided by VGNC
Official Full Name
vacuole membrane protein 1provided by VGNC
Primary source
VGNC:VGNC:36806
See related
Ensembl:ENSBTAG00000011623
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
MIR21; TMEM49
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (10674163..10802805)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene DEAH-box helicase 40 Neighboring gene clathrin heavy chain Neighboring gene peptidyl-tRNA hydrolase 2 Neighboring gene microRNA mir-21 Neighboring gene tubulin delta 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC140672

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuole membrane protein 1
Names
transmembrane protein 49

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075368.2 → NP_001068836.1  vacuole membrane protein 1

    See identical proteins and their annotated locations for NP_001068836.1

    Status: PROVISIONAL

    Source sequence(s)
    BC120116
    UniProtKB/Swiss-Prot
    Q0VCK9
    Related
    ENSBTAP00000015439.3, ENSBTAT00000015439.4
    Conserved Domains (1) summary
    cl00429
    Location:247 → 298
    SNARE_assoc; SNARE associated Golgi protein

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    10674163..10802805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059877873.1 → XP_059733856.1  vacuole membrane protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q0VCK9

  2. XM_005219886.5 → XP_005219943.1  vacuole membrane protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005219943.1

    UniProtKB/Swiss-Prot
    Q0VCK9
    Conserved Domains (1) summary
    cl00429
    Location:247 → 298
    SNARE_assoc; SNARE associated Golgi protein

  3. XM_005219885.5 → XP_005219942.1  vacuole membrane protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005219942.1

    UniProtKB/Swiss-Prot
    Q0VCK9
    Conserved Domains (1) summary
    cl00429
    Location:247 → 298
    SNARE_assoc; SNARE associated Golgi protein

  4. XM_024979873.2 → XP_024835641.1  vacuole membrane protein 1 isoform X2

    Conserved Domains (1) summary
    cl00429
    Location:117 → 168
    SNARE_assoc; SNARE associated Golgi protein

RNA

  1. XR_009491511.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0VCK9.1 GenPept UniProtKB/Swiss-Prot:Q0VCK9

Gene LinkOut

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