U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SORBS3 sorbin and SH3 domain containing 3 [ Bos taurus (cattle) ]

Gene ID: 507914, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
SORBS3provided by VGNC
Official Full Name
sorbin and SH3 domain containing 3provided by VGNC
Primary source
VGNC:VGNC:35129
See related
BGD:BT17402; Ensembl:ENSBTAG00000014401
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 8
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (69849527..69878598)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 14 Neighboring gene protein phosphatase 3 catalytic subunit gamma Neighboring gene PDZ and LIM domain 2 Neighboring gene chromosome 8 C8orf58 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC137506

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vinexin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045985.1 → NP_001039450.1  vinexin

    See identical proteins and their annotated locations for NP_001039450.1

    Status: PROVISIONAL

    Source sequence(s)
    BC114102
    UniProtKB/TrEMBL
    A0A3Q1LGV7, Q29RN1
    Related
    ENSBTAP00000042765.2, ENSBTAT00000045370.3
    Conserved Domains (5) summary
    smart00459
    Location:101 → 150
    Sorb; Sorbin homologous domain
    cd11918
    Location:605 → 662
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:375 → 429
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:449 → 504
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    pfam15466
    Location:187 → 256
    DUF4635; Domain of unknown function (DUF4635)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    69849527..69878598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005210232.4 → XP_005210289.1  vinexin isoform X3

    See identical proteins and their annotated locations for XP_005210289.1

    UniProtKB/TrEMBL
    A0A3Q1LIZ0
    Related
    ENSBTAP00000077387.1, ENSBTAT00000109130.1
    Conserved Domains (5) summary
    smart00459
    Location:164 → 213
    Sorb; Sorbin homologous domain
    cd11918
    Location:668 → 725
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:438 → 492
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:512 → 567
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    pfam15466
    Location:250 → 319
    DUF4635; Domain of unknown function (DUF4635)

  2. XM_005210237.2 → XP_005210294.1  vinexin isoform X5

    See identical proteins and their annotated locations for XP_005210294.1

    UniProtKB/TrEMBL
    A0A3Q1LIZ0, A6QLW6
    Related
    ENSBTAP00000019149.5, ENSBTAT00000019149.6
    Conserved Domains (5) summary
    smart00459
    Location:164 → 211
    Sorb; Sorbin homologous domain
    cd11918
    Location:655 → 712
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:425 → 479
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:499 → 554
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    pfam15466
    Location:237 → 306
    DUF4635; Domain of unknown function (DUF4635)

  3. XM_005210238.5 → XP_005210295.1  vinexin isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LIZ0
    Related
    ENSBTAP00000066857.1, ENSBTAT00000073421.2
    Conserved Domains (5) summary
    smart00459
    Location:148 → 197
    Sorb; Sorbin homologous domain
    cd11918
    Location:652 → 709
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:422 → 476
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:496 → 551
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    pfam15466
    Location:234 → 303
    DUF4635; Domain of unknown function (DUF4635)

  4. XM_005210233.5 → XP_005210290.1  vinexin isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LIZ0
    Conserved Domains (5) summary
    smart00459
    Location:148 → 197
    Sorb; Sorbin homologous domain
    cd11918
    Location:643 → 700
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:413 → 467
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:487 → 542
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    pfam15466
    Location:225 → 294
    DUF4635; Domain of unknown function (DUF4635)

  5. XM_005210234.5 → XP_005210291.1  vinexin isoform X4

    UniProtKB/TrEMBL
    A0A3Q1LIZ0
    Conserved Domains (5) summary
    smart00459
    Location:148 → 195
    Sorb; Sorbin homologous domain
    cd11918
    Location:639 → 696
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:409 → 463
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:483 → 538
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    pfam15466
    Location:221 → 290
    DUF4635; Domain of unknown function (DUF4635)

  6. XM_015472578.1 → XP_015328064.1  vinexin isoform X6

    Conserved Domains (3) summary
    cd11918
    Location:552 → 609
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:322 → 376
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:396 → 451
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

  7. XM_005210239.5 → XP_005210296.1  vinexin isoform X7

    Conserved Domains (3) summary
    cd11918
    Location:344 → 401
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:114 → 168
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:188 → 243
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

  8. XM_010808026.4 → XP_010806328.1  vinexin isoform X8

    See identical proteins and their annotated locations for XP_010806328.1

    Conserved Domains (4) summary
    cd11918
    Location:271 → 328
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:41 → 95
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:115 → 170
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cl25836
    Location:183 → 267
    Retinal; Retinal protein

  9. XM_024995544.2 → XP_024851312.1  vinexin isoform X8

    Conserved Domains (4) summary
    cd11918
    Location:271 → 328
    SH3_Vinexin_3; Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11921
    Location:41 → 95
    SH3_Vinexin_1; First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cd11924
    Location:115 → 170
    SH3_Vinexin_2; Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)
    cl25836
    Location:183 → 267
    Retinal; Retinal protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous