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CNTN3 contactin 3 [ Homo sapiens (human) ]

Gene ID: 5067, updated on 8-May-2016
Official Symbol
CNTN3provided by HGNC
Official Full Name
contactin 3provided by HGNC
Primary source
HGNC:HGNC:2173
See related
Ensembl:ENSG00000113805 MIM:601325; Vega:OTTHUMG00000158813
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCS; PANG; BIG-1
Orthologs
Location:
3p12.3
Exon count:
25
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 3 NC_000003.12 (74262568..74614445, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (74311719..74663587, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene heat shock protein 90kDa alpha family class B member 5, pseudogene Neighboring gene aldo-keto reductase family 1, member B1 pseudogene 2 Neighboring gene uncharacterized LOC105377166 Neighboring gene uncharacterized LOC105377167

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
Genome-wide association study of smoking behaviours among Bangladeshi adults.
NHGRI GWA Catalog
The genetic architecture of economic and political preferences.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • KIAA1496

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
contactin-3
Names
brain-derived immunoglobulin superfamily protein 1
contactin 3 (plasmacytoma associated)
plasmacytoma-associated neuronal glycoprotein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020872.2NP_065923.1  contactin-3 precursor

    See identical proteins and their annotated locations for NP_065923.1

    Status: VALIDATED

    Source sequence(s)
    AC016950, AC024222, AL512746, BC150608
    Consensus CDS
    CCDS33790.1
    UniProtKB/Swiss-Prot
    Q9P232
    Related
    ENSP00000263665, OTTHUMP00000213533, ENST00000263665, OTTHUMT00000352306
    Conserved Domains (6) summary
    smart00408
    Location:242304
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:419496
    IG; Immunoglobulin
    smart00410
    Location:506594
    IG_like; Immunoglobulin like
    cd00063
    Location:598695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227315
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p2 Primary Assembly

    Range
    74262568..74614445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005264758.2XP_005264815.1  

    Conserved Domains (5) summary
    smart00408
    Location:136200
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:314391
    IG_like; Immunoglobulin like
    cd00063
    Location:493590
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:26117
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:25114
    Ig; Immunoglobulin domain
  2. XM_005264757.2XP_005264814.1  

    See identical proteins and their annotated locations for XP_005264814.1

    UniProtKB/Swiss-Prot
    Q9P232
    Conserved Domains (6) summary
    smart00408
    Location:242304
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:419496
    IG; Immunoglobulin
    smart00410
    Location:506594
    IG_like; Immunoglobulin like
    cd00063
    Location:598695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227315
    Ig; Immunoglobulin domain
  3. XM_011533768.1XP_011532070.1  

    Conserved Domains (6) summary
    smart00408
    Location:242304
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:419496
    IG; Immunoglobulin
    smart00410
    Location:506594
    IG_like; Immunoglobulin like
    cd00063
    Location:598695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227315
    Ig; Immunoglobulin domain
  4. XM_005264759.2XP_005264816.1  

    Conserved Domains (3) summary
    smart00410
    Location:38115
    IG_like; Immunoglobulin like
    cd00063
    Location:217314
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:134217
    Ig; Immunoglobulin domain
  5. XM_011533769.1XP_011532071.1  

    Conserved Domains (3) summary
    smart00410
    Location:64152
    IG_like; Immunoglobulin like
    cd00063
    Location:156253
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:73156
    Ig; Immunoglobulin domain

Alternate CHM1_1.1

Genomic

  1. NC_018914.2 Alternate CHM1_1.1

    Range
    74265520..74524099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)