These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001013360.2 → NP_001013378.2 neuronal pentraxin with chromo domain isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC113595, AC118227, AY394488, BC060093, CD578976
- Consensus CDS
-
CCDS27651.1
- UniProtKB/TrEMBL
-
E9PZM8
- UniProtKB/TrEMBL
-
Q6TLW1
- Related
- ENSMUSP00000023060, OTTMUSP00000041656, ENSMUST00000023060, OTTMUST00000078351
- Conserved Domains (2) summary
-
- cd00024
Location:27 – 60
Blast Score: 114
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00152
Location:164 – 360
Blast Score: 624
- PTX; Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated ...
-
NM_001013362.2 → NP_001013380.2 neuronal pentraxin with chromo domain isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC113595, AC118227, AY394489, BC060093, CD578976
- Consensus CDS
-
CCDS27652.1
- UniProtKB/TrEMBL
-
F8VQB8
- UniProtKB/TrEMBL
-
Q6TLW0
- Related
- ENSMUSP00000086714, OTTMUSP00000041657, ENSMUST00000089299, OTTMUST00000078352
- Conserved Domains (2) summary
-
- cd00024
Location:27 – 60
Blast Score: 115
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00152
Location:261 – 457
Blast Score: 635
- PTX; Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCm38 C57BL/6J
Genomic
-
NC_000081.6 Reference GRCm38 C57BL/6J
- Range
- 79786351..79834333, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate Mm_Celera
Genomic
-
AC_000037.1 Alternate Mm_Celera
- Range
- 81905537..81953546, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_029079.2: Suppressed sequence
- Description
- NM_029079.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.