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Rai2 retinoic acid induced 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 501555, updated on 3-Apr-2024

Summary

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Official Symbol
Rai2provided by RGD
Official Full Name
retinoic acid induced 2provided by RGD
Primary source
RGD:1560139
See related
Ensembl:ENSRNOG00000006670 AllianceGenome:RGD:1560139
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560139
Summary
Orthologous to human RAI2 (retinoic acid induced 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 60.1), Adrenal (RPKM 45.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
Xq14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (36580406..36642943, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (32948656..33011222, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (34731891..34794589, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene Scm polycomb group protein like 1 Neighboring gene prohibitin 1 like 1 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like Neighboring gene ribosome biogenesis protein erb1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in animal organ development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
retinoic acid-induced protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109316.1 → NP_001102786.1  retinoic acid-induced protein 2

    See identical proteins and their annotated locations for NP_001102786.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474014
    UniProtKB/TrEMBL
    A6K2P7, D3ZGZ4
    Related
    ENSRNOP00000008703.1, ENSRNOT00000008703.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    36580406..36642943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063280248.1 → XP_063136318.1  retinoic acid-induced protein 2 isoform X1

    UniProtKB/TrEMBL
    A6K2P7, D3ZGZ4

  2. XM_063280247.1 → XP_063136317.1  retinoic acid-induced protein 2 isoform X1

    UniProtKB/TrEMBL
    A6K2P7, D3ZGZ4

  3. XM_063280246.1 → XP_063136316.1  retinoic acid-induced protein 2 isoform X1

    UniProtKB/TrEMBL
    A6K2P7, D3ZGZ4

  4. XM_063280244.1 → XP_063136314.1  retinoic acid-induced protein 2 isoform X1

    UniProtKB/TrEMBL
    A6K2P7, D3ZGZ4

  5. XM_039099966.2 → XP_038955894.1  retinoic acid-induced protein 2 isoform X1

    UniProtKB/TrEMBL
    A6K2P7, D3ZGZ4
    Related
    ENSRNOP00000096897.1

  6. XM_063280245.1 → XP_063136315.1  retinoic acid-induced protein 2 isoform X1

    UniProtKB/TrEMBL
    A6K2P7, D3ZGZ4
Nucleotide Protein Strain
Heading Accession and Version

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