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    alpha-catenin-related alpha-catenin related [ Drosophila melanogaster ]

    Gene ID: 49713, updated on 10-May-2012
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    Summary

    Official Symbol
    alpha-catenin-relatedprovided by Flybase
    Official Full Name
    alpha-catenin relatedprovided by Flybase
    Primary source
    FLYBASE:FBgn0029105
    Locus tag
    Dmel_CG2987
    Gene type
    protein coding
    RNA name
    alpha-catenin related
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG2987; Dmel\CG2987
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    Genomic context

    Location :
    60A14-60A14
    Sequence :
    Chromosome: 2R; NT_033778.3 (19845630..19849148)
    See alpha-catenin-related in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CG3803 gene product from transcript CG3803-RA Neighboring gene CG2980 gene product from transcript CG2980-RA Neighboring gene CG16787 gene product from transcript CG16787-RA Neighboring gene CG13566 gene product from transcript CG13566-RB Neighboring gene Flavin-containing monooxygenase 1

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. The THO complex is required for nucleolar integrity in Drosophila spermatocytes. Moon S, et al. Development, 2011 Sep. PMID 21828100.
    2. Vector and parameters for targeted transgenic RNA interference in Drosophila melanogaster. Ni JQ, et al. Nat Methods, 2008 Jan. PMID 18084299.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (11) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:72428 BioGRID:59286 Alr    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:62958 CG13871    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:62914 CG15124    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:72487 CG17018    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:60757 CG9426    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:65121 Cpr72Ea    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:64470 Hsp26    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:58574 Usp7    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:58814 dah    BioGRID  PubMed Two-hybrid 
    BioGRID:72428 BioGRID:64316 nmo    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    actin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    zonula adherens ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG2987 gene product from transcript CG2987-RA
    Names
    CG2987-PA
    alpha-catenin related
    alpha-catenin-related-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      19845630..19849148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143816.2 → NP_652073.2  alpha-catenin related [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1F1
      Related
      FBpp0072057, FBtr0072148
      Conserved Domains (1) summary
      pfam01044
      Location:38 – 232
      Blast Score: 201
      Vinculin; Vinculin family
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE013599.4 AAF47116.2
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W1F1.1 GenPept
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    Additional Links

    Gene LinkOut

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