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srp19 signal recognition particle 19kDa [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496535, updated on 5-Mar-2024

Summary

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Official Symbol
srp19provided by Xenbase
Official Full Name
signal recognition particle 19kDaprovided by Xenbase
Primary source
Xenbase:XB-GENE-5919686
See related
Ensembl:ENSXETG00000011993
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (172931405..172937733, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (134724257..134730526, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene decapping mRNA 2 Neighboring gene receptor accessory protein 5 Neighboring gene adenomatous polyposis coli Neighboring gene erythrocyte membrane protein band 4.1 like 4A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
part_of signal recognition particle IEA
Inferred from Electronic Annotation
more info
  
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
signal recognition particle 19 kDa protein
Names
signal recognition particle 19
NP_001011122.1
XP_017948251.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011122.1 → NP_001011122.1  signal recognition particle 19 kDa protein

    See identical proteins and their annotated locations for NP_001011122.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084521
    UniProtKB/TrEMBL
    Q5XGC1
    Related
    ENSXETP00000094137.1, ENSXETT00000101101.2
    Conserved Domains (1) summary
    pfam01922
    Location:16 → 114
    SRP19; SRP19 protein

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    172931405..172937733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018092762.2 → XP_017948251.1  signal recognition particle 19 kDa protein isoform X1

    UniProtKB/TrEMBL
    A0A8J0SSQ7
    Conserved Domains (1) summary
    pfam01922
    Location:16 → 90
    SRP19; SRP19 protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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