These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_006178.3 → NP_006169.2 vesicle-fusing ATPase
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the protein.
- Source sequence(s)
-
AK226078, BC030613, DB460965
- Consensus CDS
-
CCDS42354.1
- UniProtKB/Swiss-Prot
-
P46459
- Related
- ENSP00000381293, OTTHUMP00000166031, ENST00000398238, OTTHUMT00000259348
- Conserved Domains (5) summary
-
- cd00009
Location:254 – 397
Blast Score: 240
- AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
- TIGR01243
Location:159 – 606
Blast Score: 564
- CDC48; AAA family ATPase, CDC48 subfamily
- smart01073
Location:6 – 83
Blast Score: 186
- CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
- pfam02359
Location:6 – 84
Blast Score: 185
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
- cl08380
Location:111 – 159
Blast Score: 140
- CDC48_2; Cell division protein 48 (CDC48), domain 2
RNA
-
NR_040116.1 RNA Sequence
- Description
- Transcript Variant: This variant (2) lacks a coding exon compared to variant 1. This results in a frameshift and premature stop codon; the transcript is a candidate for nonsense-mediated decay (NMD) and thus is represented without protein annotation.
- Source sequence(s)
-
AK294001, BC013314, DB460965
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000017.10 Reference GRCh37.p5 Primary Assembly
- Range
- 44668035..44834830
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh37.p5 ALT_REF_LOCI_9
Genomic
-
NT_167251.1 Reference GRCh37.p5 ALT_REF_LOCI_9
- Range
- 1524848..1577443
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000149.1 Alternate HuRef
- Range
- 40092157..40095514
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)