These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_029898.1 RefSeqGene
- Range
- 5001..313771
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001037132.2 → NP_001032209.1 neuronal cell adhesion molecule isoform A precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (A).
- Source sequence(s)
-
AB002341, AJ001057, AK127035, BC114570, BU735065, BX538010, DA398450
- Consensus CDS
-
CCDS47686.1
- UniProtKB/TrEMBL
-
Q14CA1
- UniProtKB/Swiss-Prot
-
Q92823
- Related
- ENSP00000401244, OTTHUMP00000207071, ENST00000425651, OTTHUMT00000337942
- Conserved Domains (9) summary
-
- cd00063
Location:648 – 737
Blast Score: 168
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd00096
Location:472 – 539
Blast Score: 135
- Ig; Immunoglobulin domain
- cd05731
Location:288 – 358
Blast Score: 299
- Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
- cd05868
Location:375 – 450
Blast Score: 411
- Ig4_NrCAM; Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)
- cd05874
Location:64 – 140
Blast Score: 419
- Ig6_NrCAM; Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)
- pfam07679
Location:361 – 449
Blast Score: 172
- I-set; Immunoglobulin I-set domain
- pfam13882
Location:1163 – 1282
Blast Score: 496
- Bravo_FIGEY; C-terminal domain of Fibronectin type III
- cl00065
Location:750 – 832
Blast Score: 114
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:145 – 237
Blast Score: 245
- Ig; Immunoglobulin domain
-
NM_001193582.1 → NP_001180511.1 neuronal cell adhesion molecule isoform D precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and lacks two in-frame exons in the coding region, compared to variant 1. The encoded protein (isoform D) is shorter than isoform A.
- Source sequence(s)
-
AK127035, AK299870, BU735065, BX538010, DA292156
- UniProtKB/TrEMBL
-
B7Z670
- UniProtKB/Swiss-Prot
-
Q92823
- Related
- ENSP00000446469, ENST00000537765
- Conserved Domains (9) summary
-
- cd00063
Location:648 – 737
Blast Score: 169
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd00096
Location:472 – 539
Blast Score: 135
- Ig; Immunoglobulin domain
- cd05731
Location:288 – 358
Blast Score: 299
- Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
- cd05868
Location:375 – 450
Blast Score: 411
- Ig4_NrCAM; Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)
- cd05874
Location:64 – 140
Blast Score: 419
- Ig6_NrCAM; Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)
- pfam07679
Location:361 – 449
Blast Score: 172
- I-set; Immunoglobulin I-set domain
- pfam13882
Location:1070 – 1189
Blast Score: 496
- Bravo_FIGEY; C-terminal domain of Fibronectin type III
- cl00065
Location:750 – 832
Blast Score: 114
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:145 – 237
Blast Score: 244
- Ig; Immunoglobulin domain
-
NM_001193583.1 → NP_001180512.1 neuronal cell adhesion molecule isoform E precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and lacks three in-frame exons in the coding region, compared to variant 1. The encoded protein (isoform E) is shorter than isoform A.
- Source sequence(s)
-
AK127035, BC115736, BU735065, BX538010, DA292156
- Consensus CDS
-
CCDS55153.1
- UniProtKB/TrEMBL
-
E9PDA4
- UniProtKB/TrEMBL
-
Q14BM2
- UniProtKB/Swiss-Prot
-
Q92823
- Related
- ENSP00000368310, OTTHUMP00000207042, ENST00000379024, OTTHUMT00000337863
- Conserved Domains (9) summary
-
- cd00063
Location:629 – 718
Blast Score: 168
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd00096
Location:453 – 520
Blast Score: 135
- Ig; Immunoglobulin domain
- cd05731
Location:269 – 339
Blast Score: 299
- Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
- cd05868
Location:356 – 431
Blast Score: 412
- Ig4_NrCAM; Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)
- cd05874
Location:64 – 140
Blast Score: 419
- Ig6_NrCAM; Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)
- pfam07679
Location:342 – 430
Blast Score: 172
- I-set; Immunoglobulin I-set domain
- pfam13882
Location:1051 – 1170
Blast Score: 496
- Bravo_FIGEY; C-terminal domain of Fibronectin type III
- cl00065
Location:731 – 813
Blast Score: 114
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:145 – 237
Blast Score: 243
- Ig; Immunoglobulin domain
-
NM_001193584.1 → NP_001180513.1 neuronal cell adhesion molecule isoform F precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and lacks four in-frame exons in the coding region, compared to variant 1. The encoded protein (isoform F) is shorter than isoform A.
- Source sequence(s)
-
AB002341, AK127035, BU735065, BX538010, DA292156
- UniProtKB/Swiss-Prot
-
Q92823
- Related
- ENSP00000407858, ENST00000413765
- Conserved Domains (9) summary
-
- cd00063
Location:629 – 718
Blast Score: 168
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd00096
Location:453 – 520
Blast Score: 134
- Ig; Immunoglobulin domain
- cd05731
Location:269 – 339
Blast Score: 299
- Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
- cd05868
Location:356 – 431
Blast Score: 412
- Ig4_NrCAM; Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)
- cd05874
Location:64 – 140
Blast Score: 419
- Ig6_NrCAM; Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)
- pfam07679
Location:342 – 430
Blast Score: 172
- I-set; Immunoglobulin I-set domain
- pfam13882
Location:1039 – 1158
Blast Score: 497
- Bravo_FIGEY; C-terminal domain of Fibronectin type III
- cl00065
Location:731 – 813
Blast Score: 114
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:145 – 237
Blast Score: 243
- Ig; Immunoglobulin domain
-
NM_005010.4 → NP_005001.3 neuronal cell adhesion molecule isoform B precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and lacks five in-frame exons in the coding region, compared to variant 1. The encoded protein (isoform B) is shorter than isoform A.
- Source sequence(s)
-
AK127035, BC115736, BU735065, BX538010, DA292156
- Consensus CDS
-
CCDS5751.1
- UniProtKB/TrEMBL
-
Q14BM2
- UniProtKB/Swiss-Prot
-
Q92823
- Related
- ENSP00000325269, OTTHUMP00000207068, ENST00000351718, OTTHUMT00000337939
- Conserved Domains (9) summary
-
- cd00063
Location:631 – 721
Blast Score: 175
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd00096
Location:466 – 533
Blast Score: 134
- Ig; Immunoglobulin domain
- cd05731
Location:282 – 352
Blast Score: 299
- Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
- cd05868
Location:369 – 444
Blast Score: 411
- Ig4_NrCAM; Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)
- cd05874
Location:58 – 134
Blast Score: 418
- Ig6_NrCAM; Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)
- pfam07679
Location:355 – 443
Blast Score: 172
- I-set; Immunoglobulin I-set domain
- pfam13882
Location:1042 – 1161
Blast Score: 497
- Bravo_FIGEY; C-terminal domain of Fibronectin type III
- cl00065
Location:734 – 816
Blast Score: 114
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:139 – 231
Blast Score: 244
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000007.13 Reference GRCh37.p5 Primary Assembly
- Range
- 107788071..108096841, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000139.1 Alternate HuRef
- Range
- 102150368..102465060, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CRA_TCAGchr7v2
Genomic
-
AC_000068.1 Alternate CRA_TCAGchr7v2
- Range
- 107149256..107464062, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_001037133.1: Suppressed sequence
- Description
- NM_001037133.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.