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COL16A1 collagen type XVI alpha 1 chain [ Canis lupus familiaris (dog) ]

Gene ID: 487318, updated on 5-Mar-2024

Summary

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Official Symbol
COL16A1provided by VGNC
Official Full Name
collagen type XVI alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:39461
See related
Ensembl:ENSCAFG00845005746
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
72
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (69975306..70024416)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (65989263..66038324)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (68806911..68855998)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (66811227..66860204)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (67807606..67856617)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119870046 Neighboring gene uncharacterized LOC119870366 Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene uncharacterized LOC119870368 Neighboring gene penta-EF-hand domain containing 1 Neighboring gene hypocretin receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
collagen alpha-1(XVI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    69975306..70024416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038659610.1 → XP_038515538.1  collagen alpha-1(XVI) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1004 → 1160
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:739 → 922
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1104 → 1157
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038659607.1 → XP_038515535.1  collagen alpha-1(XVI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0PWM2
    Related
    ENSCAFP00845007956.1, ENSCAFT00845010210.1
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1016 → 1172
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:751 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1116 → 1169
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_038659611.1 → XP_038515539.1  collagen alpha-1(XVI) chain isoform X4

    UniProtKB/TrEMBL
    A0A8C0PKZ8
    Conserved Domains (3) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PRK07764
    Location:751 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1101 → 1154
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_038659612.1 → XP_038515540.1  collagen alpha-1(XVI) chain isoform X5

    UniProtKB/TrEMBL
    A0A8C0PXY7
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1000 → 1156
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:751 → 894
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1100 → 1153
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_038659609.1 → XP_038515537.1  collagen alpha-1(XVI) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0RUL7
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1007 → 1163
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:742 → 925
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1107 → 1160
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_038659608.1 → XP_038515536.1  collagen alpha-1(XVI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1016 → 1172
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:751 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1116 → 1169
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    66811227..66860204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038470462.1 → XP_038326390.1  collagen alpha-1(XVI) chain isoform X3

  2. XM_038470459.1 → XP_038326387.1  collagen alpha-1(XVI) chain isoform X1

  3. XM_038470463.1 → XP_038326391.1  collagen alpha-1(XVI) chain isoform X4

  4. XM_038470464.1 → XP_038326392.1  collagen alpha-1(XVI) chain isoform X5

  5. XM_038470461.1 → XP_038326389.1  collagen alpha-1(XVI) chain isoform X2

  6. XM_038470460.1 → XP_038326388.1  collagen alpha-1(XVI) chain isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    67807606..67856617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038595525.1 → XP_038451453.1  collagen alpha-1(XVI) chain isoform X3

  2. XM_038595522.1 → XP_038451450.1  collagen alpha-1(XVI) chain isoform X1

  3. XM_038595526.1 → XP_038451454.1  collagen alpha-1(XVI) chain isoform X4

  4. XM_038595527.1 → XP_038451455.1  collagen alpha-1(XVI) chain isoform X5

  5. XM_038595528.1 → XP_038451456.1  collagen alpha-1(XVI) chain isoform X6

  6. XM_038595524.1 → XP_038451452.1  collagen alpha-1(XVI) chain isoform X2

  7. XM_038595523.1 → XP_038451451.1  collagen alpha-1(XVI) chain isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    68806911..68855998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038531304.1 → XP_038387232.1  collagen alpha-1(XVI) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1004 → 1160
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:739 → 922
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1104 → 1157
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038531301.1 → XP_038387229.1  collagen alpha-1(XVI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1016 → 1172
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:751 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1116 → 1169
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_038531305.1 → XP_038387233.1  collagen alpha-1(XVI) chain isoform X4

    UniProtKB/TrEMBL
    A0A8C0PKZ8
    Conserved Domains (3) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PRK07764
    Location:751 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1101 → 1154
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_038531306.1 → XP_038387234.1  collagen alpha-1(XVI) chain isoform X5

    UniProtKB/TrEMBL
    A0A8C0PXY7
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1000 → 1156
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:751 → 894
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1100 → 1153
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_038531303.1 → XP_038387231.1  collagen alpha-1(XVI) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0RUL7
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1007 → 1163
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:742 → 925
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1107 → 1160
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_038531302.1 → XP_038387230.1  collagen alpha-1(XVI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1016 → 1172
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:751 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1116 → 1169
    Collagen; Collagen triple helix repeat (20 copies)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    65989263..66038324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038462006.1 → XP_038317934.1  collagen alpha-1(XVI) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1004 → 1160
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:748 → 922
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1104 → 1157
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038462003.1 → XP_038317931.1  collagen alpha-1(XVI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0P1Z5, A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1016 → 1172
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:760 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1116 → 1169
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_038462009.1 → XP_038317937.1  collagen alpha-1(XVI) chain isoform X4

    UniProtKB/TrEMBL
    A0A8C0PKZ8, A0A8C0RQT5
    Conserved Domains (3) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PRK07764
    Location:760 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1101 → 1154
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_038462011.1 → XP_038317939.1  collagen alpha-1(XVI) chain isoform X5

    UniProtKB/TrEMBL
    A0A8C0PXY7, A0A8C0RR03
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1000 → 1156
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:760 → 894
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1100 → 1153
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_038462004.1 → XP_038317932.1  collagen alpha-1(XVI) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0P107, A0A8C0RUL7
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1007 → 1163
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:751 → 925
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1107 → 1160
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_014109943.3 → XP_013965418.2  collagen alpha-1(XVI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0P1Z5, A0A8C0PWM2
    Conserved Domains (4) summary
    smart00210
    Location:50 → 231
    TSPN; Thrombospondin N-terminal -like domains
    PHA03169
    Location:1016 → 1172
    PHA03169; hypothetical protein; Provisional
    PRK07764
    Location:760 → 934
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:1116 → 1169
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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