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TULP4 TUB like protein 4 [ Canis lupus familiaris (dog) ]

Gene ID: 484053, updated on 5-Mar-2024

Summary

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Official Symbol
TULP4provided by VGNC
Official Full Name
TUB like protein 4provided by VGNC
Primary source
VGNC:VGNC:47999
See related
Ensembl:ENSCAFG00845001243
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (47913821..48141165)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (48570799..48797892)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (48223163..48445777)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (47791982..48015516)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (47663797..47886197)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L4-like Neighboring gene general transcription factor IIH subunit 5 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106558715 Neighboring gene transmembrane protein 181 Neighboring gene dynein light chain Tctex-type 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubby-related protein 4
Names
tubby like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    47913821..48141165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038654527.1 → XP_038510455.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  2. XM_038654531.1 → XP_038510459.1  tubby-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KYV8, A0A8C0TE97, A0A8I3MYB1
    Related
    ENSCAFP00845001676.1, ENSCAFT00845002135.1
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:949 → 1301
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1471 → 1541
    Tub; Tub family

  3. XM_038654529.1 → XP_038510457.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  4. XM_038654528.1 → XP_038510456.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  5. XM_038654530.1 → XP_038510458.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    47791982..48015516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038465769.1 → XP_038321697.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  2. XM_038465773.1 → XP_038321701.1  tubby-related protein 4 isoform X2

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:949 → 1301
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1471 → 1541
    Tub; Tub family

  3. XM_038465771.1 → XP_038321699.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  4. XM_038465770.1 → XP_038321698.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  5. XM_038465772.1 → XP_038321700.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    47663797..47886197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038590736.1 → XP_038446664.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  2. XM_038590740.1 → XP_038446668.1  tubby-related protein 4 isoform X2

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:949 → 1301
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1471 → 1541
    Tub; Tub family

  3. XM_038590738.1 → XP_038446666.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  4. XM_038590737.1 → XP_038446665.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  5. XM_038590739.1 → XP_038446667.1  tubby-related protein 4 isoform X1

    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    48223163..48445777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038526439.1 → XP_038382367.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  2. XM_038526443.1 → XP_038382371.1  tubby-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KYV8, A0A8C0TE97, A0A8I3MYB1
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:949 → 1301
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1471 → 1541
    Tub; Tub family

  3. XM_038526441.1 → XP_038382369.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  4. XM_038526440.1 → XP_038382368.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  5. XM_038526442.1 → XP_038382370.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    PHA03247
    Location:969 → 1321
    PHA03247; large tegument protein UL36; Provisional
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    48570799..48797892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038524069.1 → XP_038379997.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    PTZ00449
    Location:1061 → 1409
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  2. XM_038524381.1 → XP_038380309.1  tubby-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KYV8, A0A8P0S6M5
    Conserved Domains (5) summary
    PTZ00449
    Location:1041 → 1389
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1471 → 1541
    Tub; Tub family

  3. XM_038524151.1 → XP_038380079.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    PTZ00449
    Location:1061 → 1409
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  4. XM_014112959.3 → XP_013968434.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    PTZ00449
    Location:1061 → 1409
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family

  5. XM_038524300.1 → XP_038380228.1  tubby-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KYV8
    Conserved Domains (5) summary
    PTZ00449
    Location:1061 → 1409
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00969
    Location:375 → 409
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    COG2319
    Location:67 → 217
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]
    pfam01167
    Location:1491 → 1561
    Tub; Tub family
Nucleotide Protein
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