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LOC4803898 ubiquitin carboxyl-terminal hydrolase calypso [ Drosophila pseudoobscura ]

Gene ID: 4803898, updated on 14-Dec-2023

Summary

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Gene symbol
LOC4803898
Gene description
ubiquitin carboxyl-terminal hydrolase calypso
See related
EnsemblRapid:LOC4803898
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 3 NC_046680.1 (8173064..8175029, complement)

Chromosome 3 - NC_046680.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4803895 Neighboring gene spermatogenesis-associated protein 20 Neighboring gene protein clueless Neighboring gene uncharacterized LOC6898276 Neighboring gene uncharacterized LOC6898277 Neighboring gene lipoyltransferase 1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046680.1 Chromosome 3 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase calypso

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046680.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    8173064..8175029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001360506.4 → XP_001360543.2  ubiquitin carboxyl-terminal hydrolase calypso

    Related
    XP_001360543.2, XM_001360506.4
    Conserved Domains (2) summary
    cd09617
    Location:45 → 273
    Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
    pfam18031
    Location:347 → 392
    UCH_C; Ubiquitin carboxyl-terminal hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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