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ATP2A1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [ Canis lupus familiaris (dog) ]

Gene ID: 479797, updated on 5-Mar-2024

Summary

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Official Symbol
ATP2A1provided by VGNC
Official Full Name
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1provided by VGNC
Primary source
VGNC:VGNC:38253
See related
Ensembl:ENSCAFG00845003233
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (18520899..18535902)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (19963150..19978140)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (18551136..18566380)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (18320443..18335447)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (18235008..18250003)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111096259 Neighboring gene SH2B adaptor protein 1 Neighboring gene uncharacterized LOC106558930 Neighboring gene rabaptin, RAB GTPase binding effector protein 2 Neighboring gene CD19 molecule Neighboring gene nuclear factor of activated T cells 2 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sarcoplasmic/endoplasmic reticulum calcium ATPase 1
XP_038334638.1
XP_038334639.1
XP_038395882.1
XP_038395883.1
XP_038459964.1
XP_038459965.1
XP_038524680.1
XP_038524681.1
XP_860010.2
XP_860120.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    18520899..18535902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668753.1 → XP_038524681.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PT12, A0A8C0PT52, A0A8I3MN74
    Related
    ENSCAFP00845004542.1, ENSCAFT00845005729.1
    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_038668752.1 → XP_038524680.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PSX5, A0A8C0PT12, A0A8I3MNT3
    Related
    ENSCAFP00845004521.1, ENSCAFT00845005702.1
    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    18320443..18335447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038478711.1 → XP_038334639.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X2

    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_038478710.1 → XP_038334638.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X1

    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    18235008..18250003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604037.1 → XP_038459965.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X2

    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_038604036.1 → XP_038459964.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X1

    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    18551136..18566380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539955.1 → XP_038395883.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PT12, A0A8C0PT52, A0A8I3MN74
    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_038539954.1 → XP_038395882.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PSX5, A0A8C0PT12, A0A8I3MNT3
    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    19963150..19978140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_855027.6 → XP_860120.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PT12, A0A8C0PT52, A0A8I3MN74
    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_854917.6 → XP_860010.2  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PSX5, A0A8C0PT12, A0A8I3MNT3
    Conserved Domains (1) summary
    cd02083
    Location:5 → 988
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3
Nucleotide Protein
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