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CACHD1 cache domain containing 1 [ Canis lupus familiaris (dog) ]

Gene ID: 479541, updated on 5-Mar-2024

Summary

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Official Symbol
CACHD1provided by VGNC
Official Full Name
cache domain containing 1provided by VGNC
Primary source
VGNC:VGNC:38630
See related
Ensembl:ENSCAFG00845004709
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
27
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (45730653..45932295, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (45612175..45813740, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (45897027..46099100, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (45695151..45895690, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (45641894..45842155, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095925 Neighboring gene Janus kinase 1 Neighboring gene ribonucleoprotein, PTB binding 2 Neighboring gene 60S ribosomal protein L23a-like Neighboring gene U6 spliceosomal RNA Neighboring gene ribosomal protein L29 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VWFA and cache domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    45730653..45932295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667512.1 → XP_038523440.1  VWFA and cache domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0R3E1, A0A8C0S385, A0A8I3MXH4
    Related
    ENSCAFP00845006675.1, ENSCAFT00845008470.1
    Conserved Domains (4) summary
    cl38916
    Location:469 → 509
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam02743
    Location:694 → 887
    dCache_1; Cache domain
    pfam08399
    Location:109 → 224
    VWA_N; VWA N-terminal
    cl00057
    Location:233 → 428
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    45695151..45895690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038474424.1 → XP_038330352.1  VWFA and cache domain-containing protein 1

    Conserved Domains (4) summary
    cl38916
    Location:469 → 509
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam02743
    Location:694 → 887
    dCache_1; Cache domain
    pfam08399
    Location:109 → 224
    VWA_N; VWA N-terminal
    cl00057
    Location:233 → 428
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    45641894..45842155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038602900.1 → XP_038458828.1  VWFA and cache domain-containing protein 1

    Conserved Domains (4) summary
    cl38916
    Location:469 → 509
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam02743
    Location:694 → 887
    dCache_1; Cache domain
    pfam08399
    Location:109 → 224
    VWA_N; VWA N-terminal
    cl00057
    Location:233 → 428
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    45897027..46099100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038538809.1 → XP_038394737.1  VWFA and cache domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0R3E1, A0A8C0S385, A0A8I3MXH4
    Conserved Domains (4) summary
    cl38916
    Location:469 → 509
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam02743
    Location:694 → 887
    dCache_1; Cache domain
    pfam08399
    Location:109 → 224
    VWA_N; VWA N-terminal
    cl00057
    Location:233 → 428
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    45612175..45813740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532051.1 → XP_038387979.1  VWFA and cache domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0R3E1, A0A8C0S385, A0A8I3MXH4
    Conserved Domains (4) summary
    cl38916
    Location:469 → 509
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam02743
    Location:694 → 887
    dCache_1; Cache domain
    pfam08399
    Location:109 → 224
    VWA_N; VWA N-terminal
    cl00057
    Location:233 → 428
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
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