My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    hbn homeobrain [ Drosophila melanogaster ]

    Gene ID: 47894, updated on 10-May-2012
    Help top of page

    Summary

    Official Symbol
    hbnprovided by Flybase
    Official Full Name
    homeobrainprovided by Flybase
    Primary source
    FLYBASE:FBgn0008636
    Locus tag
    Dmel_CG33152
    Gene type
    protein coding
    RNA name
    homeobrain
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    57San; CG10614; CG15647; CG15648; CG33152; Dmel\CG33152
    Help top of page

    Genomic context

    Location :
    57B5-57B5
    Sequence :
    Chromosome: 2R; NT_033778.3 (16842169..16848414, complement)
    See hbn in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene Actin 57B Neighboring gene ncRNA Neighboring gene CG33704 gene product from transcript CG33704-RA Neighboring gene CG15649 gene product from transcript CG15649-RB Neighboring gene CG34115 gene product from transcript CG34115-RA

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573.
    2. The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae). Carpenter J, et al. PLoS One, 2009 Aug 31. PMID 19718442.
    3. Affinity Density: a novel genomic approach to the identification of transcription factor regulatory targets. Hazelett DJ, et al. Bioinformatics, 2009 Jul 1. PMID 19401399.
    4. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    5. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Help top of page

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:71041 BioGRID:66072 CG10032    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:63867 CG11486    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:59158 CG15047    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:71041 BioGRID:62692 CG6459    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:59306 CG9572    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:62993 Fem-1    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:72892 Irbp    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:71041 BioGRID:60943 Ku80    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:71041 BioGRID:71008 Mst98Ca    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:68248 Mst98Cb    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:60505 RfC3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:71041 BioGRID:63972 RfC4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:71041 BioGRID:58420 X11Lbeta    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:70919 betaggt-II    BioGRID  PubMed Two-hybrid 
    BioGRID:71041 BioGRID:60845 nimC1    BioGRID  PubMed Two-hybrid 
    Help top of page

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    sequence-specific DNA binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    sequence-specific DNA binding transcription factor activity NAS
    Non-traceable Author Statement
    more info
    		  
    Process Evidence Code Pubs
    regulation of transcription, DNA-dependent ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Help top of page

    General protein information

    Preferred Names
    CG33152 gene product from transcript CG33152-RA
    Names
    CG33152-PA
    hbn-PA
    homeobrain
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      16842169..16848414, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_176240.1 → NP_788420.1  homeobrain [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W2P8
      Related
      FBpp0071485, FBtr0071556
      Conserved Domains (1) summary
      cd00086
      Location:154 – 212
      Blast Score: 205
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA BT022158.1 AAY51553.1
    genomic AE013599.4 AAF46642.3
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W2P8.1 GenPept
    Help top of page

    Additional Links

    Gene LinkOut

      Supplemental Content

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...