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UTP15 UTP15 small subunit processome component [ Canis lupus familiaris (dog) ]

Gene ID: 478098, updated on 5-Mar-2024

Summary

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Official Symbol
UTP15provided by VGNC
Official Full Name
UTP15 small subunit processome componentprovided by VGNC
Primary source
VGNC:VGNC:48209
See related
Ensembl:ENSCAFG00845000802
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (56900377..56918895)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (53354396..53372975)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (55620047..55638574)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (53960779..53979333)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (54728707..54747412)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene basic transcription factor 3 Neighboring gene ankyrin repeat family A member 2 Neighboring gene Rho guanine nucleotide exchange factor 28 Neighboring gene U4 spliceosomal RNA Neighboring gene ectodermal-neural cortex 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 15 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    56900377..56918895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038659131.1 → XP_038515059.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Related
    ENSCAFP00845001047.1, ENSCAFT00845001358.1
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  2. XM_038659126.1 → XP_038515054.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Related
    ENSCAFP00845001036.1, ENSCAFT00845001345.1
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  3. XM_038659127.1 → XP_038515055.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  4. XM_038659128.1 → XP_038515056.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  5. XM_038659129.1 → XP_038515057.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  6. XM_038659130.1 → XP_038515058.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    53960779..53979333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038470034.1 → XP_038325962.1  U3 small nucleolar RNA-associated protein 15 homolog

  2. XM_038470029.1 → XP_038325957.1  U3 small nucleolar RNA-associated protein 15 homolog

  3. XM_038470030.1 → XP_038325958.1  U3 small nucleolar RNA-associated protein 15 homolog

  4. XM_038470031.1 → XP_038325959.1  U3 small nucleolar RNA-associated protein 15 homolog

  5. XM_038470032.1 → XP_038325960.1  U3 small nucleolar RNA-associated protein 15 homolog

  6. XM_038470033.1 → XP_038325961.1  U3 small nucleolar RNA-associated protein 15 homolog

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    54728707..54747412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038595054.1 → XP_038450982.1  U3 small nucleolar RNA-associated protein 15 homolog

    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  2. XM_038595049.1 → XP_038450977.1  U3 small nucleolar RNA-associated protein 15 homolog

    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  3. XM_038595050.1 → XP_038450978.1  U3 small nucleolar RNA-associated protein 15 homolog

    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  4. XM_038595051.1 → XP_038450979.1  U3 small nucleolar RNA-associated protein 15 homolog

    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  5. XM_038595052.1 → XP_038450980.1  U3 small nucleolar RNA-associated protein 15 homolog

    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  6. XM_038595053.1 → XP_038450981.1  U3 small nucleolar RNA-associated protein 15 homolog

    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    55620047..55638574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038530832.1 → XP_038386760.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  2. XM_038530827.1 → XP_038386755.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  3. XM_038530828.1 → XP_038386756.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  4. XM_038530829.1 → XP_038386757.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  5. XM_038530830.1 → XP_038386758.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  6. XM_038530831.1 → XP_038386759.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    53354396..53372975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038460306.1 → XP_038316234.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  2. XM_038460283.1 → XP_038316211.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  3. XM_038460285.1 → XP_038316213.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  4. XM_038460288.1 → XP_038316216.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  5. XM_038460295.1 → XP_038316223.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal

  6. XM_038460298.1 → XP_038316226.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A8C0KXW8, A0A8C0M0J2, A0A8C0QG41, A0A8I3MM94
    Conserved Domains (3) summary
    cd00200
    Location:72 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 490
    UTP15_C; UTP15 C terminal
Nucleotide Protein
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