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GTPBP4 GTP binding protein 4 [ Canis lupus familiaris (dog) ]

Gene ID: 478021, updated on 5-Mar-2024

Summary

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Official Symbol
GTPBP4provided by VGNC
Official Full Name
GTP binding protein 4provided by VGNC
Primary source
VGNC:VGNC:49777
See related
Ensembl:ENSCAFG00845000321
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (34322186..34341038, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (30973045..30991292, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (32992243..33011090, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (31405444..31424272, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (32245151..32263987, complement)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 37 Neighboring gene isopentenyl-diphosphate delta isomerase 1 Neighboring gene La ribonucleoprotein 4B Neighboring gene disco interacting protein 2 homolog C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar GTP-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    34322186..34341038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038658519.1 → XP_038514447.1  nucleolar GTP-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JUM2, A0A8C0PTY5, A0A8C0PY26, A0A8I3MAM5, A0A8P0SAZ8
    Related
    ENSCAFP00845000338.1, ENSCAFT00845000495.1
    Conserved Domains (2) summary
    COG1084
    Location:5 → 345
    Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]
    pfam08155
    Location:398 → 446
    NOGCT; NOGCT (NUC087) domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    31405444..31424272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038469465.1 → XP_038325393.1  nucleolar GTP-binding protein 1 isoform X1

    Conserved Domains (2) summary
    COG1084
    Location:5 → 345
    Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]
    pfam08155
    Location:398 → 446
    NOGCT; NOGCT (NUC087) domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    32245151..32263987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038594472.1 → XP_038450400.1  nucleolar GTP-binding protein 1 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    32992243..33011090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038530227.1 → XP_038386155.1  nucleolar GTP-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JUM2, A0A8C0PTY5, A0A8C0PY26, A0A8I3MAM5, A0A8P0SAZ8
    Conserved Domains (2) summary
    COG1084
    Location:5 → 345
    Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]
    pfam08155
    Location:398 → 446
    NOGCT; NOGCT (NUC087) domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    30973045..30991292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038454775.1 → XP_038310703.1  nucleolar GTP-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PTY5, A0A8P0SAZ8
    Conserved Domains (2) summary
    COG1084
    Location:5 → 345
    Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]
    pfam08155
    Location:398 → 446
    NOGCT; NOGCT (NUC087) domain
Nucleotide Protein
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