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PDCD4 programmed cell death 4 [ Canis lupus familiaris (dog) ]

Gene ID: 477818, updated on 5-Mar-2024

Summary

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Official Symbol
PDCD4provided by VGNC
Official Full Name
programmed cell death 4provided by VGNC
Primary source
VGNC:VGNC:44338
See related
Ensembl:ENSCAFG00845029061
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PDCD4 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (22722838..22751713)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (22350385..22379252)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (22423221..22451894)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (22282298..22310940)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (22289098..22317724)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866587 Neighboring gene U4 spliceosomal RNA Neighboring gene RNA binding motif protein 20 Neighboring gene BBSome interacting protein 1 Neighboring gene SHOC2 leucine rich repeat scaffold protein Neighboring gene adrenoceptor alpha 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death protein 4
Names
programmed cell death 4 (neoplastic transformation inhibitor)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    22722838..22751713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440548.1 → XP_038296476.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Related
    ENSCAFP00845040369.1, ENSCAFT00845051454.1
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  2. XM_038440551.1 → XP_038296479.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Related
    ENSCAFP00845040400.1, ENSCAFT00845051488.1
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  3. XM_038440549.1 → XP_038296477.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  4. XM_038440550.1 → XP_038296478.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    22282298..22310940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515176.1 → XP_038371104.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  2. XM_038515180.1 → XP_038371108.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  3. XM_038515178.1 → XP_038371106.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  4. XM_038515179.1 → XP_038371107.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    22289098..22317724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642959.1 → XP_038498887.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  2. XM_038642962.1 → XP_038498890.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  3. XM_038642960.1 → XP_038498888.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  4. XM_038642961.1 → XP_038498889.1  programmed cell death protein 4

    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    22423221..22451894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578778.1 → XP_038434706.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  2. XM_038578782.1 → XP_038434710.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  3. XM_038578781.1 → XP_038434709.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  4. XM_038578779.1 → XP_038434707.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22350385..22379252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005637722.4 → XP_005637779.1  programmed cell death protein 4

    See identical proteins and their annotated locations for XP_005637779.1

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  2. XM_038460477.1 → XP_038316405.1  programmed cell death protein 4

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  3. XM_005637721.4 → XP_005637778.1  programmed cell death protein 4

    See identical proteins and their annotated locations for XP_005637778.1

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins

  4. XM_005637723.4 → XP_005637780.1  programmed cell death protein 4

    See identical proteins and their annotated locations for XP_005637780.1

    UniProtKB/TrEMBL
    A0A8C0KGD3, A0A8C0T5S2, A0A8I3Q261, A0A8P0SSD8
    Conserved Domains (1) summary
    smart00544
    Location:327 → 440
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
Nucleotide Protein
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