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SMNDC1 survival motor neuron domain containing 1 [ Canis lupus familiaris (dog) ]

Gene ID: 477817, updated on 5-Mar-2024

Summary

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Official Symbol
SMNDC1provided by VGNC
Official Full Name
survival motor neuron domain containing 1provided by VGNC
Primary source
VGNC:VGNC:46564
See related
Ensembl:ENSCAFG00845028458
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (22186207..22198029, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (21813977..21825801, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (21886296..21898128, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (21746442..21758273, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (21750408..21762241, complement)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866585 Neighboring gene adducin 3 Neighboring gene uncharacterized LOC111093049 Neighboring gene MAX interactor 1, dimerization protein Neighboring gene uncharacterized LOC102156445 Neighboring gene protein FAM136A-like Neighboring gene uncharacterized LOC111093077 Neighboring gene uncharacterized LOC119866586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
survival of motor neuron-related-splicing factor 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    22186207..22198029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440538.1 → XP_038296466.1  survival of motor neuron-related-splicing factor 30 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KH53
    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  2. XM_038440537.1 → XP_038296465.1  survival of motor neuron-related-splicing factor 30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NWE7, A0A8I3QP62
    Related
    ENSCAFP00845039377.1, ENSCAFT00845050225.1
    Conserved Domains (1) summary
    cd20399
    Location:76 → 131
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  3. XM_038440539.1 → XP_038296467.1  survival of motor neuron-related-splicing factor 30 isoform X3

    Conserved Domains (1) summary
    cd20399
    Location:34 → 89
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    21746442..21758273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515164.1 → XP_038371092.1  survival of motor neuron-related-splicing factor 30 isoform X2

    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  2. XM_038515163.1 → XP_038371091.1  survival of motor neuron-related-splicing factor 30 isoform X1

    Conserved Domains (1) summary
    cd20399
    Location:76 → 131
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  3. XM_038515165.1 → XP_038371093.1  survival of motor neuron-related-splicing factor 30 isoform X3

    Conserved Domains (1) summary
    cd20399
    Location:34 → 89
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    21750408..21762241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642948.1 → XP_038498876.1  survival of motor neuron-related-splicing factor 30 isoform X2

    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  2. XM_038642947.1 → XP_038498875.1  survival of motor neuron-related-splicing factor 30 isoform X1

    Conserved Domains (1) summary
    cd20399
    Location:76 → 131
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  3. XM_038642949.1 → XP_038498877.1  survival of motor neuron-related-splicing factor 30 isoform X3

    Conserved Domains (1) summary
    cd20399
    Location:34 → 89
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    21886296..21898128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578766.1 → XP_038434694.1  survival of motor neuron-related-splicing factor 30 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KH53
    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  2. XM_038578765.1 → XP_038434693.1  survival of motor neuron-related-splicing factor 30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NWE7, A0A8I3QP62
    Conserved Domains (1) summary
    cd20399
    Location:76 → 131
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  3. XM_038578767.1 → XP_038434695.1  survival of motor neuron-related-splicing factor 30 isoform X3

    Conserved Domains (1) summary
    cd20399
    Location:34 → 89
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    21813977..21825801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_535011.6 → XP_535011.2  survival of motor neuron-related-splicing factor 30 isoform X2

    See identical proteins and their annotated locations for XP_535011.2

    UniProtKB/TrEMBL
    A0A8C0KH53
    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  2. XM_005637715.4 → XP_005637772.1  survival of motor neuron-related-splicing factor 30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NWE7, A0A8I3QP62
    Conserved Domains (1) summary
    cd20399
    Location:76 → 131
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  3. XM_005637716.3 → XP_005637773.1  survival of motor neuron-related-splicing factor 30 isoform X3

    See identical proteins and their annotated locations for XP_005637773.1

    Conserved Domains (1) summary
    cd20399
    Location:34 → 89
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins
Nucleotide Protein
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