My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    betaggt-II beta subunit of type II geranylgeranyl transferase [ Drosophila melanogaster ]

    Gene ID: 47757, updated on 8-Jan-2012
    Help top of page

    Summary

    Official Symbol
    betaggt-IIprovided by Flybase
    Official Full Name
    beta subunit of type II geranylgeranyl transferaseprovided by Flybase
    Primary source
    FLYBASE:FBgn0028970
    Locus tag
    Dmel_CG18627
    Gene type
    protein coding
    RNA name
    beta subunit of type II geranylgeranyl transferase
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    betaggt; betaggt II; CG18627; Dmel\CG18627; GGT-II beta
    Help top of page

    Genomic context

    Location :
    23C1-23C1
    Sequence :
    Chromosome: 2L; NT_033779.4 (2879124..2880708)
    See betaggt-II in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG8814 gene product from transcript CG8814-RA Neighboring gene Peroxiredoxin 6005 Neighboring gene CG31950 gene product from transcript CG31950-RA Neighboring gene CG3059 gene product from transcript CG3059-RD Neighboring gene lilliputian Neighboring gene RNA-binding protein 9 Neighboring gene CG3181 gene product from transcript CG3181-RA

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Use of RNA interference in Drosophila S2 cells to identify host pathways controlling compartmentalization of an intracellular pathogen. Cheng LW, et al. Proc Natl Acad Sci U S A, 2005 Sep 20. PMID 16157870.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. Downregulation of lipopolysaccharide response in Drosophila by negative crosstalk between the AP1 and NF-kappaB signaling modules. Kim T, et al. Nat Immunol, 2005 Feb. PMID 15640802.

    See all (14) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Help top of page

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:70919 BioGRID:64783 CG10627    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:68548 CG11340    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:66382 CG11722    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:65831 CG12007    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:61852 CG12744    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:59061 CG12992    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:64696 CG14130    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:58804 CG15029    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:72585 CG15126    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:72813 CG18745    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:72670 CG32736    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:66852 CG3508    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:59003 CG4829    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:60498 CG5362    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:59066 CG5703    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:62737 CG5773    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:64643 CG6175    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:67575 CG7071    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:62336 CG8547    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:61327 CG9265    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:72161 Ca-P60A    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:65021 Eig71Ee    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:64484 Nf-YA    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:60110 Rca1    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:75542 RpL41    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:61971 Syx7    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:59585 chinmo    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:66671 d-cup    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:66859 eff    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:71041 hbn    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:57749 l(1)G0144    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:66850 l(3)L1231    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:67802 mRpS24    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:69639 ogre    BioGRID  PubMed Two-hybrid 
    BioGRID:70919 BioGRID:63711 pUf68    BioGRID  PubMed Two-hybrid 
    Help top of page

    General gene information

    Homology

    • Homologs of the betaggt-II gene: The betaggt-II gene is conserved in human, dog, cow, mouse, rat, chicken, zebrafish, C.elegans, S.pombe, S.cerevisiae, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    CAAX-protein geranylgeranyltransferase activity NAS
    Non-traceable Author Statement
    more info
    		  
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Help top of page

    General protein information

    Preferred Names
    CG18627 gene product from transcript CG18627-RA
    Names
    CG18627-PA
    beta subunit of type II geranylgeranyl transferase
    betaggt-II-PA
    NP_524894.1
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      2879124..2880708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_080155.2 → NP_524894.1  beta subunit of type II geranylgeranyl transferase [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XZ68
      Related
      FBpp0077316, FBtr0077631
      Conserved Domains (2) summary
      cd02894
      Location:29 – 305
      Blast Score: 1166
      GGTase-II; Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying ...
      PLN03201
      Location:33 – 340
      Blast Score: 1162
      PLN03201; RAB geranylgeranyl transferase beta-subunit; Provisional
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AF133269.1 AAD33042.1
    mRNA AY060784.1 AAL28332.1
    genomic AE014134.5 AAF51183.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q9XZ68.1 GenPept
    Help top of page

    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...