ZKSCAN1 zinc finger with KRAB and SCAN domains 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: ZKSCAN1provided by VGNC
Official Full Name: zinc finger with KRAB and SCAN domains 1provided by VGNC
Primary source: VGNC:VGNC:8793
Locus tag: CK820_G0047483
See related: Ensembl:ENSPTRG00000044142
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	6	NC_072404.2 (109481797..109507891)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	7	NC_072405.1 (105828543..105854625)

Chromosome 6 - NC_072404.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

D11S2921 (e-PCR)
- UniSTS:152074

GDB:434012 (e-PCR)
- UniSTS:157204

L17705 (e-PCR)
- UniSTS:66091

D8S2279 (e-PCR)
- UniSTS:473907

L18426 (e-PCR)
- UniSTS:34648

D10S16 (e-PCR)
- UniSTS:155756

D15S1477 (e-PCR)
- UniSTS:474482

D1S1423 (e-PCR)
- UniSTS:149619

D11S3114 (e-PCR)
- UniSTS:152207

ZNF139 (e-PCR)
- UniSTS:69791

RH12818 (e-PCR)
- UniSTS:5792

RH102907 (e-PCR)
- UniSTS:97241

D5S1597E (e-PCR)
- UniSTS:151019

D7S1619 (e-PCR)
- UniSTS:35315

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: zinc finger protein with KRAB and SCAN domains 1

Names: zinc finger protein 36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

109481797..109507891

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001144424.7 → XP_001144424.1 zinc finger protein with KRAB and SCAN domains 1

See identical proteins and their annotated locations for XP_001144424.1

UniProtKB/TrEMBL

A0A2J8Q0H0, A0A6D2Y7C9, H2QV13

Related

ENSPTRP00000065986.1

Conserved Domains (4) summary

smart00431
Location:52 → 162

SCAN; leucine rich region

cd07765
Location:227 → 262

KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

COG5048
Location:356 → 537

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:435 → 455

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_009453749.5 → XP_009452024.1 zinc finger protein with KRAB and SCAN domains 1

See identical proteins and their annotated locations for XP_009452024.1

UniProtKB/TrEMBL

A0A2J8Q0H0, A0A6D2Y7C9, H2QV13

Conserved Domains (4) summary

smart00431
Location:52 → 162

SCAN; leucine rich region

cd07765
Location:227 → 262

KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

COG5048
Location:356 → 537

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:435 → 455

ZF_C2H2; C2H2 Zn finger [structural motif]