Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    Pnap_3784 heavy metal translocating P-type ATPase [ Polaromonas naphthalenivorans CJ2 ]

    Gene ID: 4686987, updated on 18-May-2013
    Gene symbol
    Pnap_3784
    Gene description
    heavy metal translocating P-type ATPase
    Locus tag
    Pnap_3784
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Polaromonas naphthalenivorans CJ2 (strain: CJ2)
    Lineage
    Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas
    Sequence :
    NC_008781.1 (4034501..4036828, complement)

    NC_008781.1Genomic Context describing neighboring genes Neighboring gene cbb3-type cytochrome c oxidase subunit II Neighboring gene cbb3-type cytochrome c oxidase subunit I Neighboring gene cbb3-type cytochrome oxidase maturation protein Neighboring gene rare lipoprotein B Neighboring gene leucyl-tRNA synthetase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Yagi JM, et al. Environ Microbiol, 2009 Sep. PMID 19453698.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    heavy metal translocating P-type ATPase
    YP_984001.1
    • TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase~PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein~KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_008781.1

      Range
      4034501..4036828, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_984001.1 heavy metal translocating P-type ATPase [Polaromonas naphthalenivorans CJ2]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A1VTV2
      Conserved Domains (4) summary
      pfam00122
      Location:241 – 460
      Blast Score: 430
      E1-E2_ATPase; E1-E2 ATPase
      COG2217
      Location:56 – 745
      Blast Score: 1345
      ZntA; Cation transport ATPase [Inorganic ion transport and metabolism]
      COG4087
      Location:612 – 678
      Blast Score: 110
      COG4087; Soluble P-type ATPase [General function prediction only]
      cd00371
      Location:55 – 95
      Blast Score: 127
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000529.1 ABM39080.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    ZP_01021185.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...