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FMR1 fragile X mental retardation 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 465894, updated on 19-Jul-2014
Gene symbol
FMR1
Gene description
fragile X mental retardation 1
See related
Ensembl:ENSPTRG00000022349
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
See FMR1 in MapViewer
Location:
chromosome: X
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Pan_troglodytes-2.1.4 (GCF_000001515.5) X NC_006491.3 (148650260..148689201)

Chromosome X - NC_006491.3Genomic Context describing neighboring genes Neighboring gene microRNA mir-514-4 Neighboring gene SRA stem-loop interacting RNA binding protein pseudogene Neighboring gene fragile X mental retardation 1 neighbor Neighboring gene ferritin heavy chain-like

Genomic Sequence:
NC_006491.3 chromosome X reference Pan_troglodytes-2.1.4 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • RNA transport, organism-specific biosystem (from KEGG)
    RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
  • RNA transport, conserved biosystem (from KEGG)
    RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...

Markers

Homology

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 102

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pan_troglodytes-2.1.4 Primary Assembly

Genomic

  1. NC_006491.3 

    Range
    148650260..148689201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_521294.4XP_521294.3  

    See proteins identical to XP_521294.3

    UniProtKB/TrEMBL
    H2QZ72
    Related
    ENSPTRP00000038497, ENSPTRT00000041687
    Conserved Domains (3) summary
    cd00105
    Location:286325
    Blast Score: 111
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:59117
    Blast Score: 118
    Agenet; Agenet domain
    pfam12235
    Location:427509
    Blast Score: 225
    FXR1P_C; Fragile X-related 1 protein C terminal
  2. XM_003317744.2XP_003317792.1  

    Conserved Domains (2) summary
    cd00105
    Location:286325
    Blast Score: 108
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:59117
    Blast Score: 120
    Agenet; Agenet domain
  3. XM_003317742.2XP_003317790.1  

    See proteins identical to XP_003317790.1

    Conserved Domains (2) summary
    cd00105
    Location:286325
    Blast Score: 106
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:59117
    Blast Score: 118
    Agenet; Agenet domain
  4. XM_003317740.2XP_003317788.1  

    See proteins identical to XP_003317788.1

    UniProtKB/TrEMBL
    K7BFR2
    Conserved Domains (3) summary
    cd00105
    Location:286325
    Blast Score: 111
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:59117
    Blast Score: 119
    Agenet; Agenet domain
    pfam12235
    Location:406488
    Blast Score: 223
    FXR1P_C; Fragile X-related 1 protein C terminal
  5. XM_003317741.2XP_003317789.1  

    See proteins identical to XP_003317789.1

    UniProtKB/TrEMBL
    K7DCQ6
    Conserved Domains (3) summary
    cd00105
    Location:286325
    Blast Score: 110
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:59117
    Blast Score: 119
    Agenet; Agenet domain
    pfam12235
    Location:406531
    Blast Score: 243
    FXR1P_C; Fragile X-related 1 protein C terminal
  6. XM_003317745.2XP_003317793.1  

    Conserved Domains (2) summary
    cd00105
    Location:286325
    Blast Score: 108
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:59117
    Blast Score: 120
    Agenet; Agenet domain
  7. XM_003317743.2XP_003317791.1  

    See proteins identical to XP_003317791.1

    Conserved Domains (2) summary
    cd00105
    Location:286325
    Blast Score: 106
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:59117
    Blast Score: 118
    Agenet; Agenet domain