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CLHC1 clathrin heavy chain linker domain containing 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 459237, updated on 3-Apr-2024

Summary

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Official Symbol
CLHC1provided by VGNC
Official Full Name
clathrin heavy chain linker domain containing 1provided by VGNC
Primary source
VGNC:VGNC:199
Locus tag
CK820_G0015081
See related
Ensembl:ENSPTRG00000011927
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
C2AH2orf63
Orthologs
human mouse all
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Genomic context

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See CLHC1 in Genome Data Viewer
Location:
chromosome: 2A
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 12 NC_072410.2 (67415945..67472631)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2A NC_072399.1 (55380604..55437272, complement)

Chromosome 12 - NC_072410.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 88A Neighboring gene uncharacterized LOC134807818 Neighboring gene mitochondrial translational initiation factor 2 Neighboring gene ribosomal protein S27a Neighboring gene uncharacterized LOC107973467 Neighboring gene U6 spliceosomal RNA Neighboring gene reticulon 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
clathrin heavy chain linker domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243909.1 → NP_001230838.1  clathrin heavy chain linker domain-containing protein 1

    See identical proteins and their annotated locations for NP_001230838.1

    Status: VALIDATED

    Source sequence(s)
    AK304915
    UniProtKB/TrEMBL
    A0A2J8N3A8, A0A6D2XRX7, G2HDV1
    Related
    ENSPTRP00000077850.1, ENSPTRT00000100555.1
    Conserved Domains (1) summary
    pfam13838
    Location:175 → 232
    Clathrin_H_link; Clathrin-H-link

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072410.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    67415945..67472631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009442340.5 → XP_009440615.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_009440615.1

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2
    Conserved Domains (2) summary
    pfam13838
    Location:297 → 354
    Clathrin_H_link; Clathrin-H-link
    pfam15739
    Location:30 → 136
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  2. XM_009442343.4 → XP_009440618.1  clathrin heavy chain linker domain-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_009440618.1

    UniProtKB/TrEMBL
    A0A2J8N3A8, A0A6D2XRX7, G2HDV1
    Conserved Domains (1) summary
    pfam13838
    Location:175 → 232
    Clathrin_H_link; Clathrin-H-link

  3. XM_063788806.1 → XP_063644876.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

  4. XM_063788812.1 → XP_063644882.1  clathrin heavy chain linker domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8N3A8, A0A6D2XRX7, G2HDV1

  5. XM_063788817.1 → XP_063644887.1  clathrin heavy chain linker domain-containing protein 1 isoform X4

  6. XM_063788819.1 → XP_063644889.1  clathrin heavy chain linker domain-containing protein 1 isoform X5

  7. XM_063788807.1 → XP_063644877.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

  8. XM_009442339.4 → XP_009440614.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_009440614.1

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2
    Conserved Domains (2) summary
    pfam13838
    Location:297 → 354
    Clathrin_H_link; Clathrin-H-link
    pfam15739
    Location:30 → 136
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  9. XM_063788808.1 → XP_063644878.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

  10. XM_009442337.3 → XP_009440612.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_009440612.1

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2
    Conserved Domains (2) summary
    pfam13838
    Location:297 → 354
    Clathrin_H_link; Clathrin-H-link
    pfam15739
    Location:30 → 136
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  11. XM_063788810.1 → XP_063644880.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

  12. XM_016943290.4 → XP_016798779.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2
    Related
    ENSPTRP00000051955.3
    Conserved Domains (2) summary
    pfam13838
    Location:297 → 354
    Clathrin_H_link; Clathrin-H-link
    pfam15739
    Location:30 → 136
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  13. XM_054677184.2 → XP_054533159.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2

  14. XM_063788814.1 → XP_063644884.1  clathrin heavy chain linker domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8N3A8, A0A6D2XRX7, G2HDV1

  15. XM_063788820.1 → XP_063644890.1  clathrin heavy chain linker domain-containing protein 1 isoform X5

  16. XM_063788805.1 → XP_063644875.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

  17. XM_009442341.3 → XP_009440616.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_009440616.1

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2
    Conserved Domains (2) summary
    pfam13838
    Location:297 → 354
    Clathrin_H_link; Clathrin-H-link
    pfam15739
    Location:30 → 136
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  18. XM_016943275.3 → XP_016798764.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2
    Conserved Domains (2) summary
    pfam13838
    Location:297 → 354
    Clathrin_H_link; Clathrin-H-link
    pfam15739
    Location:30 → 136
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  19. XM_063788813.1 → XP_063644883.1  clathrin heavy chain linker domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8N3A8, A0A6D2XRX7, G2HDV1

  20. XM_063788811.1 → XP_063644881.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

  21. XM_063788809.1 → XP_063644879.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

  22. XM_054677183.2 → XP_054533158.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2

  23. XM_063788815.1 → XP_063644885.1  clathrin heavy chain linker domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8N3A8, A0A6D2XRX7, G2HDV1

  24. XM_054677182.2 → XP_054533157.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8N3C5, A0A6D2WCE9, H2R8T2

  25. XM_063788818.1 → XP_063644888.1  clathrin heavy chain linker domain-containing protein 1 isoform X4

  26. XM_063788816.1 → XP_063644886.1  clathrin heavy chain linker domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8N3A8, A0A6D2XRX7, G2HDV1
Nucleotide Protein
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